RNA id: TU88981


Basic Information

Item Value
RNA id TU88981
length 849
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G71160
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 18686498 ~ 18687346 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGGAGGCAGCCATAGAACATGTTTAAAACTAACAGTCTATAGTCTGAGCTTCTAGGTAACTTAAACAAAatcctgtctattttaaaatgtaaaagaaaatgtgttagaTTTTGCAGGTATCATTTTTACATCCATAACAAATACGGTCATtagctgctgtttttattattattattatttttatttttatttcttggcagatgacCTTATCCAGAGGGTCTGAAGTGAAATCATAACTAAAAAAGATGCTGTTAGAGAAGTATGAAAgatgtgaagaaaaatatactTGATTCTTCAGCtcatatcattttatttctaaatgaaagCATTTTCAGCATGGTTCAAGTATAGGAATGTCAGTTCATATTTCGAGTTGTTTAACATGTGATTGTAATAGTTTAAGTGAAGGCATGGTTTGTGAATGGGTTTGTTGGTGGTTTATATCATAATCTGACATAATCTGTGTTTTGTGGATCCTAGTTTCCCCTTCTGCCCAGCTTTCACTGCAGTGATTCAGGGCATGACATCTCTATTGCATCACCTGCACTAAAGCACAAAATCAGTCAGTATTGACAGCTCGTAATTAAGAGACCAGTGCCACAGGGCAAAGCTACCCCTGGGTCAGAACAAAGTGGTTTTATCGCTGAACTTCATCTCACGTGTATCTGACACAGGCCTGTCCTTGAGTCAAGAAATGGCTTTGCAATTTAATATTGGATCAATAGGTAACAATACTGGAGTTTGTGCCTCCAATtattgtatgcatgtgtgtgtggaaataattattctaacTGAATTGCTATAATATCTGTGTCACCCCTAATTCTCACTTTTTAACGCGTCTTAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88975 lncRNA downstream 16843 18668801 ~ 18669655 (-) True G71157
TU88951 lncRNA downstream 21867 18664264 ~ 18664631 (-) True G71133
TU88747 lncRNA downstream 355398 18329197 ~ 18331100 (-) True G71016
TU88673 lncRNA downstream 664403 18014826 ~ 18022095 (-) True AMCG00014567
TU88667 lncRNA downstream 682475 18003810 ~ 18004023 (-) True G70954
TU89001 lncRNA upstream 163378 18850724 ~ 18851111 (-) True G71174
TU89007 lncRNA upstream 187259 18874605 ~ 18878253 (-) True G71179
TU89158 lncRNA upstream 504039 19191385 ~ 19191632 (-) True G71284
TU89162 lncRNA upstream 514457 19201803 ~ 19202950 (-) True AMCG00014604
TU89164 lncRNA upstream 525298 19212644 ~ 19214404 (-) True G71290
AMCG00014585 mRNA downstream 41828 18639812 ~ 18644670 (-) True AMCG00014585
AMCG00014579 mRNA downstream 129210 18489550 ~ 18557288 (-) True AMCG00014579
AMCG00014576 mRNA downstream 199218 18485261 ~ 18487280 (-) True AMCG00014576
AMCG00014577 mRNA downstream 208576 18475543 ~ 18477922 (-) True AMCG00014577
AMCG00014578 mRNA downstream 218216 18467410 ~ 18468282 (-) True AMCG00014578
AMCG00014588 mRNA upstream 8729 18696075 ~ 18709409 (-) True AMCG00014588
AMCG00014589 mRNA upstream 33459 18720805 ~ 18766660 (-) True AMCG00014589
AMCG00014590 mRNA upstream 89430 18776776 ~ 18777608 (-) True AMCG00014590
AMCG00014593 mRNA upstream 244791 18932137 ~ 18946921 (-) True AMCG00014593
AMCG00014597 mRNA upstream 284090 18971436 ~ 18999017 (-) True AMCG00014597
TU87063 other downstream 7024005 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 7888351 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 9369331 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 10302274 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 10527908 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 9642393 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 10701944 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 13575821 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 13910116 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 13910116 32597462 ~ 32619149 (-) False G73127

Expression Profile