RNA id: TU89001


Basic Information

Item Value
RNA id TU89001
length 388
lncRNA type inter_gene
GC content 0.28
exon number 1
gene id G71174
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 18850724 ~ 18851111 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAACACATCATGAAtgcattcagttttatttaggAAGGAAGATCTTAATTGGTAGCCTTTACTTTAAGGCATCtcaaaatgtacaacaaaatCGAACCACTGATTTCAgcagaatacaaaaatacacatctcAGTGACTTCCCCACAGTAATAAATAGGTATTAACCATGCATTctacaataaaaaaggcacagaAAACAGTCACTTAGTAGTCATAAAAATTACTAACTACTTTACCAAAGTCACCCAAATATCTATACAAGTAACTGTAACATTATATTCCAAAGGTGAAAACACGttaaacagttttgtttcttaaaacgTATGCAATAAATACTCAAAtatcgtatatatatatatatatatatatatatatatatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88981 lncRNA downstream 163378 18686498 ~ 18687346 (-) True G71160
TU88975 lncRNA downstream 181069 18668801 ~ 18669655 (-) True G71157
TU88951 lncRNA downstream 186093 18664264 ~ 18664631 (-) True G71133
TU88747 lncRNA downstream 519624 18329197 ~ 18331100 (-) True G71016
TU88673 lncRNA downstream 828629 18014826 ~ 18022095 (-) True AMCG00014567
TU89007 lncRNA upstream 23494 18874605 ~ 18878253 (-) True G71179
TU89158 lncRNA upstream 340274 19191385 ~ 19191632 (-) True G71284
TU89162 lncRNA upstream 350692 19201803 ~ 19202950 (-) True AMCG00014604
TU89164 lncRNA upstream 361533 19212644 ~ 19214404 (-) True G71290
TU89165 lncRNA upstream 363503 19214614 ~ 19215246 (-) True G71291
AMCG00014590 mRNA downstream 73116 18776776 ~ 18777608 (-) True AMCG00014590
AMCG00014589 mRNA downstream 84064 18720805 ~ 18766660 (-) True AMCG00014589
AMCG00014588 mRNA downstream 141315 18696075 ~ 18709409 (-) True AMCG00014588
AMCG00014585 mRNA downstream 206054 18639812 ~ 18644670 (-) True AMCG00014585
AMCG00014579 mRNA downstream 293436 18489550 ~ 18557288 (-) True AMCG00014579
AMCG00014593 mRNA upstream 81026 18932137 ~ 18946921 (-) True AMCG00014593
AMCG00014597 mRNA upstream 120325 18971436 ~ 18999017 (-) True AMCG00014597
AMCG00014601 mRNA upstream 263256 19114367 ~ 19122826 (-) True AMCG00014601
AMCG00014602 mRNA upstream 308818 19159929 ~ 19162787 (-) True AMCG00014602
AMCG00014600 mRNA upstream 323571 19174682 ~ 19184193 (-) True AMCG00014600
TU87063 other downstream 7188231 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 8052577 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 9533557 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 10466500 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 10692134 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 9478628 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 10538179 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 13412056 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 13746351 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 13746351 32597462 ~ 32619149 (-) False G73127

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU172387 True 148 lncRNA 0.36 2 CI01000029 750049 ~ 750982 (+)
eurasian perch (Perca fluviatilis) TU172387 True 1621 lncRNA 0.39 2 NC_053123.1 30456134 ~ 30457858 (+)
tiger barb (Puntius tetrazona) TU99694 False 1497 lncRNA 0.37 2 NC_056707.1 3437757 ~ 3459238 (-)