RNA id: TU89166


Basic Information

Item Value
RNA id TU89166
length 825
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G71292
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 19216213 ~ 19217037 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGctggaaatattttattttattgagcagtccatctgtaaaacaaataaaattgagaaaatatcttacacattttcacaaactATTTCAATATACAAAACGCAATGCTGCTTACAGCACTATCAAACCAACAGAAACTGCCTGAAATATCAGGCAATACAGAAAGCTCCTCTAACTGTAGACATGCTTATTGTGGACACAGTTTAAAGTCCAAACACAGTATTGAACACCTCCAGCTTCAATTCCGTTGAgatcactgacacacacaggcctaCATCAGTGCATGAGGGCTCTCCGGTATCATTAGCTCCAAGaacataaagtaaataaaagtcAGACACTTATTGCTTCTATTTAAACATTATCTTTAGATGAATAGTcataaaaacattaacagattttcttttcccCAAAAGCTCttgtaaatatatgcatgtacaCTGGGTAGTATAAGAAATAACATTGACTATTTATTTTGCGCTGATCCTTGAGTTTATCAgtggaaaatttaaaaaaaaaacatttggtatTGGGTGGGGGAGTGTGTCTACAAGCATCCATCTTCAGAGGAGTCAGCcgtattaaaaaacattgaaatacaaaaaggtTAAAACAAATGGAGTTTTTCAGTGACAAGGTATCAGCGCAACAGGTAAGCGCACTGTGCCAGTAtctttcccagaatgcacttcTGCCAGGCCAGGCTAGTCACTCTTCTCCTCGCCCTGGTAGTGTCTGTACTCTGGCTTGAGCTCCCACGTGTTTTTGTGGGTGCCTTTCACATTGTAGATCCCAATCTCACGCAGAATCTCTTTCAGGTAAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89165 lncRNA downstream 967 19214614 ~ 19215246 (-) True G71291
TU89164 lncRNA downstream 1809 19212644 ~ 19214404 (-) True G71290
TU89162 lncRNA downstream 13263 19201803 ~ 19202950 (-) True AMCG00014604
TU89158 lncRNA downstream 24581 19191385 ~ 19191632 (-) True G71284
TU89007 lncRNA downstream 337960 18874605 ~ 18878253 (-) True G71179
TU89167 lncRNA upstream 867 19217904 ~ 19218128 (-) False AMCG00014603
TU89190 lncRNA upstream 35537 19252574 ~ 19255934 (-) True G71315
TU89243 lncRNA upstream 575762 19792799 ~ 19880231 (-) True G71360
TU89256 lncRNA upstream 855988 20073025 ~ 20078009 (-) True G71371
TU89264 lncRNA upstream 969592 20186629 ~ 20186968 (-) True G71379
AMCG00014604 mRNA downstream 12646 19202812 ~ 19203567 (-) False AMCG00014604
AMCG00014600 mRNA downstream 32020 19174682 ~ 19184193 (-) True AMCG00014600
AMCG00014602 mRNA downstream 53426 19159929 ~ 19162787 (-) True AMCG00014602
AMCG00014601 mRNA downstream 93387 19114367 ~ 19122826 (-) True AMCG00014601
AMCG00014597 mRNA downstream 217196 18971436 ~ 18999017 (-) True AMCG00014597
AMCG00014603 mRNA upstream 685 19217722 ~ 19225230 (-) True AMCG00014603
AMCG00014615 mRNA upstream 113851 19330888 ~ 19338660 (-) True AMCG00014615
AMCG00014614 mRNA upstream 125094 19342131 ~ 19345670 (-) True AMCG00014614
AMCG00014616 mRNA upstream 169578 19386615 ~ 19390852 (-) True AMCG00014616
AMCG00014623 mRNA upstream 1142109 20359146 ~ 20401033 (-) True AMCG00014623
TU87063 other downstream 7553720 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 8418066 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 9899046 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 10831989 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 11057623 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 9112702 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 10172253 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 13046130 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 13380425 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 13380425 32597462 ~ 32619149 (-) False G73127

Expression Profile