RNA id: TU89315



Basic Information


Item Value
RNA id TU89315
length 433
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G71424
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 21311590 ~ 21312022 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


cccttttgctgccaaaacagccctgacccgtcgaggcatggactccactagacctctgaaggtgtgctgtggtatctggcaccaagacgttagcagcagatcctttaagtcctgtaagttgcgaggtggggcctccatggatcggacttgtttgtctagcacatcccacagatgctctattggattgagatctggggaatttggaggccaagtcaacaccttgaactcgtgattcatcagaccaggccaccttcctccattgctccgtggtccagttctgatgctcacgtgcccattgtaggcactttcggcagtggacaggggtcagcatggacaccctgactggtctgcggctacgcagccccatacgcaacaaactgcgatgcactgtgtgttctgacacctttccatcagaaccagcattcactttttc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU89305 lncRNA upstream 386753 20924568 ~ 20924837 (+) True G71414
TU89263 lncRNA upstream 1124624 20186614 ~ 20186966 (+) True G71378
TU89246 lncRNA upstream 1386392 19924902 ~ 19925198 (+) True G71362
TU89148 lncRNA upstream 2088671 19218317 ~ 19222919 (+) True G71283
TU89346 lncRNA downstream 807561 22119583 ~ 22122533 (+) True G71452
TU89354 lncRNA downstream 876617 22188639 ~ 22188927 (+) True G71459
TU89355 lncRNA downstream 883597 22195619 ~ 22195875 (+) True G71460
TU89357 lncRNA downstream 916404 22228426 ~ 22230696 (+) True G71462
TU89423 lncRNA downstream 1343336 22655358 ~ 22655614 (+) True G71518
AMCG00014624 mRNA upstream 644410 20646339 ~ 20667180 (+) True AMCG00014624
AMCG00014619 mRNA upstream 1238520 20024521 ~ 20073070 (+) True AMCG00014619
AMCG00014618 mRNA upstream 1289896 19959589 ~ 20021694 (+) True AMCG00014618
AMCG00014617 mRNA upstream 1467548 19843152 ~ 19844042 (+) True AMCG00014617
AMCG00014605 mRNA upstream 1927271 19380431 ~ 19384319 (+) True AMCG00014605
AMCG00014632 mRNA downstream 935759 22247781 ~ 22264000 (+) True AMCG00014632
AMCG00014635 mRNA downstream 3070745 24382767 ~ 24385815 (+) True AMCG00014635
AMCG00014636 mRNA downstream 3380264 24692286 ~ 24759297 (+) True AMCG00014636
AMCG00014638 mRNA downstream 3576511 24888533 ~ 24897009 (+) True AMCG00014638
AMCG00014637 mRNA downstream 3616009 24928031 ~ 24937965 (+) True AMCG00014637
TU88725 other upstream 3037230 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 3863137 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 4842477 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 5178788 16129525 ~ 16132802 (+) False AMCG00014508
TU88058 other upstream 5631802 15675631 ~ 15679788 (+) False AMCG00014490
TU89430 other downstream 1543320 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 6523481 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 6556681 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 6990351 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 8539428 29851450 ~ 29851821 (+) True G72605

Expression Profile