RNA id: TU89346


Basic Information

Item Value
RNA id TU89346
length 2925
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G71452
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 22119583 ~ 22122533 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aAATAgtacatttattgaaaaattGTTTTCAACAGTAATAACACACAACTTACAAAATCCCTAAATTGACAATTTTAACAAAGCAACTTGGTACAGTCAGTGCAGCATAATGATTCATTACAGGTTTACAAatcatacacaaatataaaaagataaGCATCAAGTAAgatttttttcatattgtgtatatatcacacacacacactgcactgaataACAGTAGAAATCCTGATATTCTCAGTTTTCTATATTAATAGTTCCATGATATGTCCATCTGTTCAGAGAAACCAACCAATTTATCAAAAAAGTACTCAAGAGTATCATACTTCTTTGCCATTTATAATACTTTACTAAAAATACAGAGCATATCTTGGGCTGCagttatgtattaaacatggttttcttttttcatactTCCAGAGAATAGTTATTTCTTCGtggaaaaataatatgtttaataaacaaGGAGTGCAAGTGGGGGAAATCTACTAGTCTGTCTGTTATTCTTAAATCATTTAATATGTTTGCTTCCATATATCCAACATGCACTATTTGATAGTGACAGAGTAAAGGTAAAATAGAAAGCCATTCTTCAACATCATGTAAGCAGTCAGGAACATAACATTTGGCAAAAGGCTTGCTTTTCAACATGATCATTTCCCAAATCAATTACAgattataaatgattaaaatcaGGAAGAAAAACTGGTTTTAAGCCTCGTGCACAGGTATGGAAGGTCCCAAAACATTTCAGTAGACAGTAAAATGATAGAAGAACATGTATTTAGTTGAATTTTACTTTGAgacataatataatttaatataaatccaTAGTTTAGcctgtttttcttcataatttGAACTGTCAGTAAATGAAGAGAGTCATCACACCCTGGGGCTGTCATTTAGTTGACTAAACCAGAAAAGATTAAAGGTTGGAGAGACACCCTTCTCCAAgatctggaaataattaattaagaattttgcatcaaataaattaaatcaaattatccCAGTGGTCTGACAACACCCCGTTTAAAATTTCAGAATTACATGTCAGAACTGCTATGCATACATTGGAGCATTCTTTCCAAACAGCACTCCACAAAGCTTGTGTACAATATTTCAAGTAAATTAGATGGGATGAAATAGGAAAATAACACCCAGAAAAATAGATACTTGGAGAACAATCATAAACAAACAACGATAAGGAAAACAGGACGAGACGTGACGTTCAATTGTCATACTTAGAGATTTTAGATGGACTCGCAATGTTAAATCCACTTTTGCATTTTCGTTTTGTTGATTCAACGGTACTTCTCATTTCCTTCACACTTTCAGATTCCAACATACTATGAAATGGGGAACTTCCCTCAGCCTGATCGAGCTGGGCTTCGGTAGAGGTGGAAGAAGATGAAGATCCAGGCTTTGCCTCCTCCGAAAATCCATGCGAATCAAACAGCAAATCAAACGACATTTCATCCGATTGCGAGAAACCTTGATTCATTTGGAGACTGCTGACCTGTGTACCCTCTTCTTGCGACAAACAaaacttttctttcatttcaggGGAACGTAAAGCCCTGTTGGACATGGAAACTGGGTTACTGTCATTTTTCCCTTCCCTGCCCTCTGGAGAACAGGATGCAATACGTTGGTTCGTTCTCACCTTTTCCTCAAGCTGTCCGTCAACTTCATTCATAAGTTCAGTGCAAGCTGCCAGTTCTGGTATCAAAGTAATATCAAGGTCAGAGGACTGTGTCGACATTAAAGAGAAATGAGAGCCCCTGCTGCTTTCAGATTCAGATATCATAGTGTCCAACTCAGAGATTTTATCAAGGTAAGCAGCTTCCATGGATGCCTCGCTTGACATTCTTAAGCGGTTCGTTTCCGAGTCAGCAATAACCTGAAAGGGTCCactcaaaacattttcacatttactttTTCCACCAGTGGGTTGGTCTTCAGCTTGACTAGAGCCTGCCGTCTCAGAAGCATCAAGGTCAGCATGGCACTTTCCCCAGAAAACTGGCTGTGTAGTTCTAGCTTGTGCTTTGTGTTCTCCAGGCATGATATTACCTCCATTAGAGTCACCTAATCTGTCTTTCTCCAGTTTAGATGATTTACTACATCCCTCATCATCAAAACTTAGTTTTCTTAGGTAAGATAAAGGCTTTACACCACTCTTTCTTTGACTGTGATCTCTAGGGCTGTTTAAACTAAGGCAGCCAAAAGATGAGGAAGGAGTAGTAGCCACAGAAAGATCTGAATCATTCTTGTCTTTTTTGGGAGTGATATCATCACAGGTCTTCTTGACTGGTAAGACACTAGATGCATTGCTTTTTGTtgcagtagaaaaaataaatctgcagggCCTTGAGAGCTTGCCATTGTTTGCCAGATCTGTGCACTCTGGTGCTTCTTCCATGCCACTGGCACTACTACTCATGTTTGCTATCCCATGGCACTCCTTTTTACATGGCTTGTTGCACACTGCAAGCTGCTCACTGCTGGGTTCCCCTTGAAATGGTGAATCTACAGTGTTTAGCTTAACTACCTCACAGGAATTACCCACATTCTCCTCttcatcatttgttttcttcatattaGTTACTTGACCTTCCAAATCCTCTATGTACTTATCACTTCTTTCGAGTGCTCTCCTCAGATGGGTGGCATCACGTTCATGTTGCTCAATCTTTGCCTCCAATGCCGCTACTGTGAACCTGCCAAACCTGTGGAAGCAAAACTACATGGTGAACTTTAAGCCTTATATCCAATAATTGTTTTGCAACTAATGTTGTTATTCTGATATTCAATCATAGACTCTCTctgagcaaagaaaaaaaagtgtattcacaatatttacatatggagtatataataaagattaataattgtatacacattctgtatttattcatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89315 lncRNA upstream 807561 21311590 ~ 21312022 (+) True G71424
TU89305 lncRNA upstream 1194746 20924568 ~ 20924837 (+) True G71414
TU89263 lncRNA upstream 1932617 20186614 ~ 20186966 (+) True G71378
TU89246 lncRNA upstream 2194385 19924902 ~ 19925198 (+) True G71362
TU89156 lncRNA upstream 2896664 19218317 ~ 19222919 (+) False G71283
TU89354 lncRNA downstream 66106 22188639 ~ 22188927 (+) True G71459
TU89355 lncRNA downstream 73086 22195619 ~ 22195875 (+) True G71460
TU89357 lncRNA downstream 105893 22228426 ~ 22230696 (+) True G71462
TU89423 lncRNA downstream 532825 22655358 ~ 22655614 (+) True G71518
TU89463 lncRNA downstream 1242227 23364760 ~ 23365002 (+) True G71557
AMCG00014624 mRNA upstream 1452403 20646339 ~ 20667180 (+) True AMCG00014624
AMCG00014619 mRNA upstream 2046513 20024521 ~ 20073070 (+) True AMCG00014619
AMCG00014618 mRNA upstream 2097889 19959589 ~ 20021694 (+) True AMCG00014618
AMCG00014617 mRNA upstream 2275541 19843152 ~ 19844042 (+) True AMCG00014617
AMCG00014605 mRNA upstream 2735264 19380431 ~ 19384319 (+) True AMCG00014605
AMCG00014632 mRNA downstream 125248 22247781 ~ 22264000 (+) True AMCG00014632
AMCG00014635 mRNA downstream 2260234 24382767 ~ 24385815 (+) True AMCG00014635
AMCG00014636 mRNA downstream 2569753 24692286 ~ 24759297 (+) True AMCG00014636
AMCG00014638 mRNA downstream 2766000 24888533 ~ 24897009 (+) True AMCG00014638
AMCG00014637 mRNA downstream 2805498 24928031 ~ 24937965 (+) True AMCG00014637
TU88725 other upstream 3845223 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 4671130 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 5650470 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 5986781 16129525 ~ 16132802 (+) False AMCG00014508
TU88058 other upstream 6439795 15675631 ~ 15679788 (+) False AMCG00014490
TU89430 other downstream 732809 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 5712970 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 5746170 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 6179840 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 7728917 29851450 ~ 29851821 (+) True G72605

Expression Profile