RNA id: TU89490


Basic Information

Item Value
RNA id TU89490
length 272
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G71581
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 23705163 ~ 23705434 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

caaccggcatttccaaaagatggcatggattgacatcagtcataaatcaagcccccctccaataggacactgggggctaaaaccgaaatccaatctcaaaaactcaagaaccaatcacctattgatctgacaggcgtataaagaacagcgcacggtctctctctctctctctctctctctctcacctgaaccagaaactcgctgccacagctcaacctgtagctctgttgcccgaactggaaccagaaaccaaccaagtctttgccggcaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89482 lncRNA upstream 107840 23597118 ~ 23597323 (+) True G71574
TU89463 lncRNA upstream 340161 23364760 ~ 23365002 (+) True G71557
TU89423 lncRNA upstream 1049549 22655358 ~ 22655614 (+) True G71518
TU89357 lncRNA upstream 1474467 22228426 ~ 22230696 (+) True G71462
TU89355 lncRNA upstream 1509288 22195619 ~ 22195875 (+) True G71460
TU89493 lncRNA downstream 202951 23908385 ~ 23908649 (+) True G71584
TU89505 lncRNA downstream 626997 24332431 ~ 24333297 (+) True G71596
TU89508 lncRNA downstream 818211 24523645 ~ 24532961 (+) True G71598
TU89583 lncRNA downstream 1377225 25082659 ~ 25082878 (+) True G71662
TU89593 lncRNA downstream 1403722 25109156 ~ 25109378 (+) True G71670
AMCG00014632 mRNA upstream 1441163 22247781 ~ 22264000 (+) True AMCG00014632
AMCG00014624 mRNA upstream 3037983 20646339 ~ 20667180 (+) True AMCG00014624
AMCG00014619 mRNA upstream 3632093 20024521 ~ 20073070 (+) True AMCG00014619
AMCG00014618 mRNA upstream 3683469 19959589 ~ 20021694 (+) True AMCG00014618
AMCG00014617 mRNA upstream 3861121 19843152 ~ 19844042 (+) True AMCG00014617
AMCG00014635 mRNA downstream 677333 24382767 ~ 24385815 (+) True AMCG00014635
AMCG00014636 mRNA downstream 986852 24692286 ~ 24759297 (+) True AMCG00014636
AMCG00014638 mRNA downstream 1183099 24888533 ~ 24897009 (+) True AMCG00014638
AMCG00014637 mRNA downstream 1222597 24928031 ~ 24937965 (+) True AMCG00014637
AMCG00014643 mRNA downstream 1381580 25087014 ~ 25102638 (+) True AMCG00014643
TU89430 other upstream 849517 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 5430803 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 6256710 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 7236050 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 7572361 16129525 ~ 16132802 (+) False AMCG00014508
TU90165 other downstream 4130069 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 4163269 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 4596939 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 6146016 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 7058917 30764351 ~ 30805741 (+) False AMCG00014777

Expression Profile