RNA id: TU89505


Basic Information

Item Value
RNA id TU89505
length 867
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G71596
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 24332431 ~ 24333297 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGTGCTAAGGTGCATCTAGTGCAGATAGTGAAGTAGATTAGCACCTACTGCCCTAAGTGCTCCTTCTGGCATAAGGGGCTGTGATCTGCATCCAGCAGGATGAAGACccgttttatttgtatttatatttttgcagttCTCTGCTAGTTTTGCATAGTTGCACTACAAGAAAAATTGAGTTGTGCAAATCTATGCAAAACTGATGGTGGACTGCTTTATCTCCACCTGTTGTAAATTATAAAGTTGGACCAGGGGTATTCATTTGGGAAGTTTTTTGGCTGTGGATGTGATGAATCTGATTAAACTTCAGGTGAACTGATGCTTAGTTAATGCCCTGTGGATGGTGCCTGATGAGTTTCAGCAGTATTAAAGTGCTTATAGTGCAGGTAGTTTTTATTGATCTACTGCAGTATGAGCACTTAAAGTACTTCTAGCTTCAAGCGACGGACTTTTGTAATGGTCACTTGCGCTCGCTGCCACTGGTCTCTGGTTAGTTTTGCTGGTTTGCATTCAGCTTTAACAGTACTGTTGCTGTGCAAATCCATGCAAAACTGACCATAGCAGTGAACATTATCGGAGTATTGCTGTATGCAGGAGTCCCTTTCTGTGCAGGTTGGGATGGGTGGCAATGCTGTTTACTTGTAAGGTATTGCACTTGTCCCGGCCTGTTGAGGACTGGGGGAATTTTGCATCGGTTGTTTGTGCCTTTAATTTCtcttctgtaaaatgttgggaATTGTCAATACATCAGTTTCACGCAGACCCATTTCATTCTAGTGGTTTGTAAATTGttcatgtaacttttttttgtgtgtgtgtatgttctgCAATATATCTGAAATAAAGACTGTTTTTCATGAAACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89493 lncRNA upstream 423782 23908385 ~ 23908649 (+) True G71584
TU89490 lncRNA upstream 626997 23705163 ~ 23705434 (+) True G71581
TU89482 lncRNA upstream 735108 23597118 ~ 23597323 (+) True G71574
TU89463 lncRNA upstream 967429 23364760 ~ 23365002 (+) True G71557
TU89423 lncRNA upstream 1676817 22655358 ~ 22655614 (+) True G71518
TU89508 lncRNA downstream 190348 24523645 ~ 24532961 (+) True G71598
TU89583 lncRNA downstream 749362 25082659 ~ 25082878 (+) True G71662
TU89593 lncRNA downstream 775859 25109156 ~ 25109378 (+) True G71670
TU89672 lncRNA downstream 1200045 25533342 ~ 25534154 (+) True G71725
TU89720 lncRNA downstream 1372161 25705458 ~ 25762742 (+) True G71763
AMCG00014632 mRNA upstream 2068431 22247781 ~ 22264000 (+) True AMCG00014632
AMCG00014624 mRNA upstream 3665251 20646339 ~ 20667180 (+) True AMCG00014624
AMCG00014619 mRNA upstream 4259361 20024521 ~ 20073070 (+) True AMCG00014619
AMCG00014618 mRNA upstream 4310737 19959589 ~ 20021694 (+) True AMCG00014618
AMCG00014617 mRNA upstream 4488389 19843152 ~ 19844042 (+) True AMCG00014617
AMCG00014635 mRNA downstream 49470 24382767 ~ 24385815 (+) True AMCG00014635
AMCG00014636 mRNA downstream 358989 24692286 ~ 24759297 (+) True AMCG00014636
AMCG00014638 mRNA downstream 555236 24888533 ~ 24897009 (+) True AMCG00014638
AMCG00014637 mRNA downstream 594734 24928031 ~ 24937965 (+) True AMCG00014637
AMCG00014643 mRNA downstream 753717 25087014 ~ 25102638 (+) True AMCG00014643
TU89430 other upstream 1476785 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 6058071 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 6883978 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 7863318 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 8199629 16129525 ~ 16132802 (+) False AMCG00014508
TU90165 other downstream 3502206 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 3535406 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 3969076 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 5518153 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 6431054 30764351 ~ 30805741 (+) False AMCG00014777

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00074826 False 3677 lncRNA 0.38 2 NC_007120.7 53433585 ~ 53438152 (-)
grasscarp (Ctenopharyngodon idella) CI01000048_01357896_01360700.mRNA True 1329 mRNA 0.43 4 CI01000048 1357112 ~ 1360744 (+)