RNA id: TU89508


Basic Information

Item Value
RNA id TU89508
length 2356
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G71598
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 24523645 ~ 24532961 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACGGTGGTGCCATGCTGTCTGAGTGTAATGCACTGACTGATCAAAGTGTGCTATGGAGAAGCTATCGACATTGGAATTGATAGATGCAGGGACACCGGAGAAGGTGAATGAAAACGGAAGGCATACCCAGCAGACAGAAAACGTTGAAGCTGAGGATAGATCGGGCACAGACAGCAGAGAAGGGGCCAACCTTCTGacctttaatttgatttgtgtgattacattgcttttaaatgtgtgctaACATCACTGACCTGCAGTGTTTAGCTCTAATGATGGTTTCATAAGCCTGATGAAAAGGGGTTATAATAGTAGTGCAAAGATGGGAACGGTTCCCTTTGTTGTCCATTGCACAGTGCCTCTCCTATCAGGGATAAtagggaaacaaaaaataaaaagcagcatgATATTATAATTACTTTACAAGATACCTATAGATACATGCTCCGCCTTGAAGAAAAAGTGTAGCTAAGCAGCAGATTGCTCTGTTCAGAACCGAAGGTGACATTTCTACAGAatcactgtgtgtctctgtgctgctcaTACTTTATTACAGGGCATCTCATTAAAATTGAAGTGTCTACTACTTTTACTCTTGTCAAACACTGATTGCTACTTATGTGACAGACATTAATTTAAGACTTaattaacattacaaataatgtaatgtctaACTTTCTGCATCATTAATTTATGAACCGTAATTTTGCCAAGATAACTACCCAATCGTATATTAAAATGCCATACATTATGTAGGCCTCACAGACTAGCTGTACACATAATATAgcactctttttaaaaaacTTGTCACAGTTTCTGTTGTTGTGAGATagtgaaagaaagagaggcTTAACagctatgtttttttatattatatcagTCTCTGCTAGAAGTTTAGACTTCATTGAAAaggttctgttcttttttttcttttcaaaaataatatatccctatgttataaagtataatttgtatttttttcttaaagaaaaccaaacataattattatatatattccagACACTTTTTATTTGCCACCTCTTCATGTTCCtaggtttttccttttgtttaaaaGCCTCCAGTGGGCTCTCCAATGCAGCaggtcaattaattaatttacctaCGACTCCAAAAAGagacaaagttttttttttttttcctcatataATGAACCAACTCCACTTATTTCAGGTTTccatattttctaaataattaattatttttagctGTGACTCCGTCACTTTCCAATCTCTATTGTATTTAAGAATTAAAGCTACAATGACAGAATgccttatttaaaatataagcacatattaattcagtaaaatgtaattgcagaCACTTTTCTTCAACAGTCCTTGAGTTTCTAGAAATCATAGACCGAGGTTTGAGATAATGTACGAATTGCAGTAAATAATATtgcaaatatgaataaaaagaTTACCAATAGAAAATTGAGGGAGAACGGGGGATGGGGGACACATATATTTGTGTACTAGGCAATGTACACACTTCTCTGTCCTTGAAAAGAACACAAGTTTGCACAACCACTGCAAAGAATGCACAAATTGTAACCCCCAATAATAAAAAGTTCTTCCACCATGCGAGTCACAATGAAGTAAATAAAGAAGAATGGGCTGAGTCCCACAGAATACAGACTGCAGGCTTATATCCAGTCTGCAATGCACAATTGACCATTAACAGTTAGCAGGTGGTTCCCTTGTTGATGCGCAACAGGGACCCCTGCTGGTCAAGTAGCAGAACAGTGAGAGCCGTGCCCATCCTCTCCCAAGTGATCAGCCACTTGTGATGTCATGGAGGACACTGGAGTCTTTCCACAGCTCTCCTAAGCATCTATGTAGTACAAAAACTGGGGAACAGATTGCTGCAGCTGTATTTTGCAcacataacaataaatacatcagatcACTTTTTCAACCCTTATCAAATCATATACTGCACATTCGGTTTTGAGATTCACAGATTTCACAGGATTTTGTTTCCAGTGCAATATTTGCACAGATGTTTGCAATGTCCGTTAGTTTGCAACTAAaatccaaaaatatatttttgatttgttttttcaatacctacattttatattggtaattttacattttataggtTTGTGaatatgtagaaaatgtatgtatttactatAGGTAAAGGGAGGAGGGCTGCCTTTTAGTGATAAATAGTTTTgccttgttttaattattataaatgatcaTTTAACACATGTATCCGTtctattttcctgtttttgcaaaataataccCTGCCCCTGGAAAAAAAGCTGTTAAAGTGACATATGTCTGTTTATTCTTCTATTTAGATCtcaaataatgtttatatt

Function

GO:

id name namespace
GO:0030145 manganese ion binding molecular_function
GO:0043167 ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89505 lncRNA upstream 190348 24332431 ~ 24333297 (+) True G71596
TU89493 lncRNA upstream 614996 23908385 ~ 23908649 (+) True G71584
TU89490 lncRNA upstream 818211 23705163 ~ 23705434 (+) True G71581
TU89482 lncRNA upstream 926322 23597118 ~ 23597323 (+) True G71574
TU89463 lncRNA upstream 1158643 23364760 ~ 23365002 (+) True G71557
TU89583 lncRNA downstream 549698 25082659 ~ 25082878 (+) True G71662
TU89593 lncRNA downstream 576195 25109156 ~ 25109378 (+) True G71670
TU89672 lncRNA downstream 1000381 25533342 ~ 25534154 (+) True G71725
TU89720 lncRNA downstream 1172497 25705458 ~ 25762742 (+) True G71763
TU89729 lncRNA downstream 1212842 25745803 ~ 25748408 (+) True G71772
AMCG00014635 mRNA upstream 137830 24382767 ~ 24385815 (+) True AMCG00014635
AMCG00014632 mRNA upstream 2259645 22247781 ~ 22264000 (+) True AMCG00014632
AMCG00014624 mRNA upstream 3856465 20646339 ~ 20667180 (+) True AMCG00014624
AMCG00014619 mRNA upstream 4450575 20024521 ~ 20073070 (+) True AMCG00014619
AMCG00014618 mRNA upstream 4501951 19959589 ~ 20021694 (+) True AMCG00014618
AMCG00014636 mRNA downstream 159325 24692286 ~ 24759297 (+) True AMCG00014636
AMCG00014638 mRNA downstream 355572 24888533 ~ 24897009 (+) True AMCG00014638
AMCG00014637 mRNA downstream 395070 24928031 ~ 24937965 (+) True AMCG00014637
AMCG00014643 mRNA downstream 554053 25087014 ~ 25102638 (+) True AMCG00014643
AMCG00014646 mRNA downstream 591133 25124094 ~ 25126045 (+) True AMCG00014646
TU89430 other upstream 1667999 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 6249285 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 7075192 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 8054532 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 8390843 16129525 ~ 16132802 (+) False AMCG00014508
TU90165 other downstream 3302542 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 3335742 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 3769412 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 5318489 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 6231390 30764351 ~ 30805741 (+) False AMCG00014777

Expression Profile