RNA id: TU89720


Basic Information

Item Value
RNA id TU89720
length 2460
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G71763
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 25705458 ~ 25762742 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTagattttatttctcttaatCACTTGCAAGCTTACAAGGAGTTCAATACCTTGGTGTTTTTAATGACATAAGCAAGGATTATATACAGGACTATAAATTGTCAGCAAtgttacagaaaatgaaatttacacttttttttttattagcatcTGTAATAAGTATcccatcattaataataaatgtcataAAGGAccagatttttgtttattctgtacTGCAATACTTGCTCTTTACACACAGTTACAAAAATATTGGATTTTGTAAAATTCTTTATTGATTCATTCCATACAATATAACCTGTGCTGAAATAATGCATCCTGATGATCTCACTACTTTATTGCCATATTTGCAAAGGTACAGTAGCAACAGTGTAAGGTATGACAACACAAAATGATGGCCTCAAGTACcaaattttcttttaaataaccaATAAACCTTTTACAAAGTGCAACACAGAGATTAAGAATTAAACTGGACAGACTCCACAAGGTgcaaattacaatacaaaagagaagggcaggggaaaaaaaagaaaaataaagattcaggggtcaaaaaaaaacatggcactTTTTTCCACATGGGACAAGAGTATGATGGGAACAGATGCTTGGTCCGTTTGAAAGGTATGTGGTGCCTGTTTCACACACCTCCACTGAAGGGGACACTACCAAGGcaggaaagaaaaatggaaatctTTTCTTAAACTGGGAAGAAGGGGACAAAATCTTGTGTTATAGAAAcatcattcaaatataaaaccaGTAAGCTGAGTGTGTCCCCAGGTCTCtgctgcgtgtgtgtgcagggaCTGTGAAAGTGTGTAGGAAACGAacgcaaacaaaaaaatataatatcgGAAGACTATTTTGGTGTCTCCCTGATACTTCACAAATATTttagggaaggaaaaaaaaaaaaaagttgaccAAATTATAATTACCAGTGTGTTTGTTATTACCCAAACTCCATTGACAGAAATCAATAGCGCAAACTAAAACAAGCAAAGCGGTGTCTTTGTTTATTGACAAAGCAAAACGCTGTATTGAGTGCCTTCTGCAACTAGTTAACATACTAGCATTCATAGGTCCtcctccaaaacaaaaaagtaagaTCCGATTTACTATCCTGTTCTGAAAATTAGACTTTCCCTGTATGCAGGCCACCAGGAATTCTcacactttctttaaaagctAAAACATGCACTTAAAAATGATTGTTTCCCCCAGACGGAAgattcaaacaaaatgaaaccaacTAGCTTTACAGTTTTATAGAGTGACAACCAGTCTAAGTGTGTCTTCCTccatttattaatcattattgcCGCATACACTCTGTTGTCTTGATAGCTGCAGGGTTCATACtactaaacaaaaaactaagcaaaaaccaacaaaatgaCTTCACCAAGAGTTGTTTTAAGCTCTGACTTCAGGCCCCACTCTCTAATTGTACAGTGGATGGTGATAAGGCCAGCTCTACGCAACACTTGCCCCTGGTACTGTGGAGTGCTATAACGCACACCACAAACACGGGTTCAGAGATGCCAGAGATACCTCACGCAGACGGGACTCGCAATGGtctggagggatggagggagtcGAGAGGGGGACAGCAGCCCTGCCCTTCCCAGACCCGTGTTTTTGCAGTTGATATCTGCACTCAAACTAAAAGCAGCCAGCAATGGTGGTCCAAGTGCCACTGGTCCACTGTTCATGTGCCACCTTATGTGCTCAGTTTCTACttgaaagcaatacaaatttaaGGACATCGGCAtccattgcatttcattttaaagtcaaGTTCGTACAGTTACATTTTCAGATCTTTACGACTTCTATATTATACCACTTACTAATTTCTTATGGctactttatatttatatatataaatatatcgcAAAAAAAGGCAATTCTTTTCAGAGTGCAATTTCAGCTGTTTGTTCCACTATTTAATTCGATTAACCAGATAAAATATCAGTCTTGTGGCAATGAAGTCTTAGAGGAAATTTAAAATGACTGCAGTGTAAATATTAAGGGCAAAGTGATCCCTGCCACTGGTGctagtaattcatattttataattttagtaAACCATTTTTTCCAGGATTCGTTTCACTGACCTTTGACACAGCAGACAGAATGGAAAAAAAgcataagacaaaaaaaaaaaagacagtatCAGTGTAAAGCAAGTGATATCAAAAGTGAGCGCTGTTTTCCAGGACAGAATACCAAAATATAAACGGGCATATGCAGTTTGAAAATCCTCCGCTATTTCAATAGCAAATTAACagcaaaaactatttaatttaaactttaattggcaaatcaaatacaaatccTATTGCACAAGGAAGTCTGTTCACAATAATAAATGTAGGACCAGGTATGATgtctggaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaaatgaaagaaagaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89672 lncRNA upstream 171304 25533342 ~ 25534154 (+) True G71725
TU89593 lncRNA upstream 596080 25109156 ~ 25109378 (+) True G71670
TU89583 lncRNA upstream 622580 25082659 ~ 25082878 (+) True G71662
TU89508 lncRNA upstream 1172497 24523645 ~ 24532961 (+) True G71598
TU89505 lncRNA upstream 1372161 24332431 ~ 24333297 (+) True G71596
TU89742 lncRNA downstream 7467 25770209 ~ 25770489 (+) True G71784
TU89783 lncRNA downstream 189491 25952233 ~ 25959702 (+) True G71817
TU89798 lncRNA downstream 248057 26010799 ~ 26011000 (+) True G71826
TU89834 lncRNA downstream 468477 26231219 ~ 26231565 (+) True G71859
TU89946 lncRNA downstream 1142135 26904877 ~ 26911237 (+) True AMCG00014687
AMCG00014655 mRNA upstream 6530 25660345 ~ 25698928 (+) True AMCG00014655
AMCG00014657 mRNA upstream 74604 25608988 ~ 25630854 (+) True AMCG00014657
AMCG00014654 mRNA upstream 112891 25575240 ~ 25592567 (+) True AMCG00014654
AMCG00014652 mRNA upstream 131450 25565157 ~ 25574008 (+) True AMCG00014652
AMCG00014653 mRNA upstream 174609 25522226 ~ 25530849 (+) True AMCG00014653
AMCG00014661 mRNA downstream 171739 25934481 ~ 25941543 (+) True AMCG00014661
AMCG00014660 mRNA downstream 273691 26036433 ~ 26052543 (+) True AMCG00014660
AMCG00014665 mRNA downstream 323117 26085859 ~ 26123768 (+) True AMCG00014665
AMCG00014664 mRNA downstream 405719 26168461 ~ 26172474 (+) True AMCG00014664
AMCG00014667 mRNA downstream 441141 26203883 ~ 26244458 (+) True AMCG00014667
TU89430 other upstream 2849812 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 7431098 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 8257005 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 9236345 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 9572656 16129525 ~ 16132802 (+) False AMCG00014508
TU90165 other downstream 2072761 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 2105961 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 2539631 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 4088708 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 5001609 30764351 ~ 30805741 (+) False AMCG00014777

Expression Profile