RNA id: TU89783


Basic Information

Item Value
RNA id TU89783
length 4022
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G71817
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 25952233 ~ 25959702 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCCCTTGTGGCCGAGCAGATGAATGATGCCAGGTGTGCTGTTCCTCTGGGGCAGCTCTGGGTGTGAAGTCTGTCCTGGGAGGCCTGTCTTAACATGTGAGAGCAACAGGGAGCACAGGATTTGAATGCAGCTCCCTGGGGCTGAAGAGGAGGGCCAGGCTGAGCAGGAGCAAGTATTCAGAAACACCACAGGGCTCATCCTCAGGCTGAGCTCAGGCCTCCAGGGCTCAGTACGTCTGTCTAGGATTGATTGGAGAATGGTGGTCTGGCTAGTAGTTCCTCTGGTGCTGTTGTCTCctttttgttccatAGCCATTCCAGTTTAGGCTGTGTATTCAGCAGtaatgctgaaaggtgaacttccgtCCACTTGTagataagtaaaaaaaaaaaaacaatcttagtgcattttaattccaggctgtACGGCAACAAATGGTGAACATTTAGATATGGGgtatagactttctataggctcTGTATAACTCCACATTCGAGAATTTGTTCTAACCTTGTCTCATattaatattcagtttttttatttttttatttggtccTGTGGAATGGAATTTGaggtgtatacacacacacacatgcaatacatccatccatccatccgtatacatatatatagtctatatataGTGCCCTTTCACCCTCACTCTATTCTACCATTCCATATTTTGTGAGCCTTTACTTTCCAAATCTGTTTTGATCTACCATCTAACATCACTTTCCTAGGGTAGGAGAGATTTGTAAGGGTTATCAAAGACAGGTGATAAGGCTCTTTATTGAAGATACTCctttcacattttcaacattaaCAATTCATGTCAATGAATGTCAAACAATACAAGCAGCACTAGTCCTTAGCTGAACTGTTTTAATGAAACTATCACAGTTTTGGTGTGTATGGATCATGATAGTTTCTCCACCTCGCTATGCATCTCCTGCATTCTGTACAGTGTGCACAGCATCATACAATTAACgaatcatattttaatcttaGTTACCAAGACAAATAGAATACACTGTTGCCAAGACACAAGTTCCAGTTTGCCGTTTCAGAAGCTACCAAGTGAAACTCACCTGGACAGTTCGAACAAACGTTAAAAGTTGTGGTTACAGCTTGTATGCCAATGCAACTCCCATCCTTTGCTGATTTGTTCCTGGGCAAACCTGTATTTACTTTCAGTTTGGAAAGTACAGGATGTGACAGTAATGTTTcaattatacttaaaaaaattataatgccACATAGCATGATTGCAAATGTTTTAACTTCATAGCTCAGCAGggttcatatttatttcaacaggAAATGCATGTGCTTAAGGAGTTTAGAACAAAcaacttttaaattatgttcaaatgaagaaaatatatatgtaaaatagcTGCAATAAGCAATTTTGTTCACTGTCAATTAATTATGCACAAccatatatttacaaaacaatatataatatatacatttattagaaAAAAGACACTAGTTCCAATTACAGTAAAATGGAAACATTCAGTAGCATGCTTTTAACGGCACCAGTATGAATGCCCATTAATTCTATTACATACtaatgtgtgtcagtgtaagGCTACCATATCCAGCATCAGGTACACATTGATTCCGAGGCTGCGGATGTcactgtataaatgtataataaacacaatttacacaTTTGAAAAGTCTTTATATATGAGAACAATCTCTTTTTATactaaaatgcaattaaacacaattatcaGGTCTATGGCAGGTCTATTCTAGCTTAGGAAGaatgtataaattacattttcacgTTTTACAAAATCATTCAATATAGTATATGATggcattaaaaaatagactttaTGAAGGAATAACacattttagttgatttataACCATGCAAGATAAAGTATTGGcagaaacattttgtaatataattctTACTTCATTCATGGGAACACTTAGTTCCTCTAAAACGTCTGTATTAATCCAGAGCATTGTTTGAGTAAATTATGTATCTAGgtcaattaaacacaatttggAGTGaaggcatttttttaaattgtagcaACAATTTACCAGTCTTGGCCTGGAAACTCAGTGTATGATGGTTACAAGTATTTAAAACGACTCACTCTTTTGCAACTGTTGCAACATAATTCTTGTCACAGCATTGTTTTGCATTAGTACGTTTCAAGGAATACTTGAATCGTAACTGTTTTCGTTCTGTGACCAGGATGATTCAGTGCTAACATGCTAATCTGTTATCTAAGTGCTAAAGTGGCTGGTCCCCTGGTAGAAGAGCTAAGAAAAGtgttcacttttttatttggttatttcCTCTTTAATTATTACtagttttatttacacatttattatttgagaaaatagaaaaattaaCCACACTCACCCATATCTCTTCAATGTTGAGAAATGTTTTGCTGAGAATCTTACAATCTTATCAGAAGTGCAAAACATCCTCTTAGAAGAGTGGAGTGAAATGACATGTGCAACTAAATGTCTCAAGATCTGAAACTGGCCAATGAATTCACATTCACTGAACTTTACACAGTATGAAAGTTagattgaaatgttttcaacacAAACCAGATATAACTCTGAGAATAAGTATTTGTCACGTCTGTTCTATAATCCATTGATAGATCTTCTCTCTAGAAAAGTCAATCTCATGTgcatcctgtgtttttgtgcatgttATTTAACCCTTGCATagattcataaaaaaaagttttttgagAACACTGATAGACTGCCCAAGACAACTCTGTAGGCTCTGTCCTTcccaaatataatatatatattttttttcctcacccATATCCAGGAGTTTTGGATTGAATCACTGTGATGTGAATGGCTTACTCTGTACAGTTTAAATTGTGCTCAGCTCCCACTTCAGTGTGGCCAGTCAATGtggtcagtgtttgtttttgttactgtttaAGTGCATTGAAACTTTGTTGTGCTCGATGATATCTCTTGAGGAACAATCCGGAGAAGTCCTGACCACACTGGAGAATGACACACTGACCTGCCGTTTCATCAGCTTCATGATTTTCCTTTTGTAGCCTTTGCaggcaaagaaataaataaaagggtcCATGCAGCTGTTGAAGTTCATCAGACACACTGTGAAATGCAGGGACACCTGAAATCTGTGCAGCTCGGAGCAGTCGGGCGTATACAGCAGTTTCTTAACCATGAACTGTAAGATGTCAATGTGGTAGGGACTGAAGCAGACCACAAACACCAGGATGACGAAAAAGATCACACTGATGGCCTTTTTATTCCTTCCAGATTTCTCGGTGAGGTGGTTTTGCTTGGCTGTGGAATAAAGCTTCCAGCATAATCCAGAATAGCAGACTAATATGGTTACCACTGGGATAACATATCCTAAAAACACAGCGCCTATCAGCATAAAAGGCAGGTTAGGCAGGTTTTCGAAATTTGGGTATTCCATGCAGGTTGTGTGTCCGCCTGCTTCTAGTTTCGTCATGGGCATGGTGAGCAAAGGAAGCGTCTGAACCAGTACGATGAGCCACACGATGATGCAGATGTACTTGACATTTTGAACTTTGCGGAAGCGGCTGTAGCGCAGGGGCAGCACCACGGCGATGAAGCGGTCCACACTCAGGCAGGTCATGAAGTTCACCCCGGCATAGGTGTTGATGTAGAAGATAAGGGCAATGACTCTGCACAGCGCTTCCCCCATGATCCAGTCGAAGCCCCGGGCATAGTAGACAATGCGCAGGGGCAGGGACAGGGTGAAGAGGATGTCAGAGATGACAAGGTTGGTGGAGTAGAGGGTGGTGGAGTTAATCTTCTTCAGGTTAGGCCTGATAACGTGAAGGGCTAGGGCATTGCCCAGTAGGCCCACGATGAAGACGATGGAGTAGTGCAGTGGCATGAGGATCTTGGCAGTACCGCGGTGGTCATACAGGTTGGTACAGGTCTCATTGCTCATGTTGCTGCTCAACTCCATTTGTTTCAGCAATGCAGGGTTTTGCAT

Function

GO: NA

KEGG:

id description
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89742 lncRNA upstream 181744 25770209 ~ 25770489 (+) True G71784
TU89720 lncRNA upstream 189491 25705458 ~ 25762742 (+) True G71763
TU89729 lncRNA upstream 203825 25745803 ~ 25748408 (+) True G71772
TU89672 lncRNA upstream 418079 25533342 ~ 25534154 (+) True G71725
TU89593 lncRNA upstream 842855 25109156 ~ 25109378 (+) True G71670
TU89798 lncRNA downstream 51097 26010799 ~ 26011000 (+) True G71826
TU89834 lncRNA downstream 271517 26231219 ~ 26231565 (+) True G71859
TU89946 lncRNA downstream 945175 26904877 ~ 26911237 (+) True AMCG00014687
TU89956 lncRNA downstream 992594 26952296 ~ 26953253 (+) True G71963
TU89992 lncRNA downstream 1067073 27026775 ~ 27027272 (+) True G71995
AMCG00014661 mRNA upstream 10690 25934481 ~ 25941543 (+) True AMCG00014661
AMCG00014655 mRNA upstream 253305 25660345 ~ 25698928 (+) True AMCG00014655
AMCG00014657 mRNA upstream 321379 25608988 ~ 25630854 (+) True AMCG00014657
AMCG00014654 mRNA upstream 359666 25575240 ~ 25592567 (+) True AMCG00014654
AMCG00014652 mRNA upstream 378225 25565157 ~ 25574008 (+) True AMCG00014652
AMCG00014660 mRNA downstream 76731 26036433 ~ 26052543 (+) True AMCG00014660
AMCG00014665 mRNA downstream 126157 26085859 ~ 26123768 (+) True AMCG00014665
AMCG00014664 mRNA downstream 208759 26168461 ~ 26172474 (+) True AMCG00014664
AMCG00014667 mRNA downstream 244181 26203883 ~ 26244458 (+) True AMCG00014667
AMCG00014668 mRNA downstream 358329 26318031 ~ 26335361 (+) True AMCG00014668
TU89430 other upstream 3096587 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 7677873 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 8503780 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 9483120 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 9819431 16129525 ~ 16132802 (+) False AMCG00014508
TU90165 other downstream 1875801 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 1909001 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 2342671 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 3891748 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 4804649 30764351 ~ 30805741 (+) False AMCG00014777

Expression Profile