RNA id: TU89834


Basic Information

Item Value
RNA id TU89834
length 347
lncRNA type intronic
GC content 0.42
exon number 1
gene id G71859
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 26231219 ~ 26231565 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccatgtcacaaaggtcgaatcatttcaaattggtttcttgaacatgacaatgagttcactgtactaaactggcccccacagtcaccagatctcaacccaatagagcatctttgggatgtggtggaacgggagcttcgtgccctggatgtgcatcccacaaatctccatcaactgcaagatgctatcctatcaatatgggccaacatttctaaagaatgctttcagcaccttgttgaatcaatgccacgtagaattaaggcagttctgaaggcgaaagggggtcaaacacagtattagtatggtgttcctaataatcctttaggtgagtgtatatatatatatatatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89798 lncRNA upstream 220219 26010799 ~ 26011000 (+) True G71826
TU89783 lncRNA upstream 271517 25952233 ~ 25959702 (+) True G71817
TU89742 lncRNA upstream 460730 25770209 ~ 25770489 (+) True G71784
TU89720 lncRNA upstream 468477 25705458 ~ 25762742 (+) True G71763
TU89729 lncRNA upstream 482811 25745803 ~ 25748408 (+) True G71772
TU89946 lncRNA downstream 673312 26904877 ~ 26911237 (+) True AMCG00014687
TU89956 lncRNA downstream 720731 26952296 ~ 26953253 (+) True G71963
TU89992 lncRNA downstream 795210 27026775 ~ 27027272 (+) True G71995
TU90084 lncRNA downstream 1243499 27475064 ~ 27479444 (+) True G72072
TU90207 lncRNA downstream 2009001 28240566 ~ 28297484 (+) True G72169
AMCG00014664 mRNA upstream 58745 26168461 ~ 26172474 (+) True AMCG00014664
AMCG00014665 mRNA upstream 107451 26085859 ~ 26123768 (+) True AMCG00014665
AMCG00014660 mRNA upstream 178676 26036433 ~ 26052543 (+) True AMCG00014660
AMCG00014661 mRNA upstream 289676 25934481 ~ 25941543 (+) True AMCG00014661
AMCG00014655 mRNA upstream 532291 25660345 ~ 25698928 (+) True AMCG00014655
AMCG00014668 mRNA downstream 86466 26318031 ~ 26335361 (+) True AMCG00014668
AMCG00014669 mRNA downstream 141659 26373224 ~ 26389223 (+) True AMCG00014669
AMCG00014670 mRNA downstream 157667 26389232 ~ 26409091 (+) True AMCG00014670
AMCG00014676 mRNA downstream 353916 26585481 ~ 26588394 (+) True AMCG00014676
AMCG00014677 mRNA downstream 393196 26624761 ~ 26628707 (+) True AMCG00014677
TU89430 other upstream 3375573 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 7956859 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 8782766 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 9762106 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 10098417 16129525 ~ 16132802 (+) False AMCG00014508
TU90165 other downstream 1603938 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 1637138 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 2070808 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 3619885 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 4532786 30764351 ~ 30805741 (+) False AMCG00014777

Expression Profile