RNA id: TU89858


Basic Information

Item Value
RNA id TU89858
length 346
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G71882
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 26334655 ~ 26335000 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCAAAAGTGGTGAGAATACTGAACCACATCATGCATCATCTCGAAACGGAAAGATTCCCCTTACCTTGGCTGTTCTGGCCGCAGTCATACTGTTCTGCATTTTCATCGCCTCAATCACACAGATTTCTTGTCCCTCGGCCACCTATGGACAGACAGTCAAATGGGTGAGGCACATTAATGACATTCACAACACCACGTCTCTGTCATTGGAAACCGGAGCATGCTATTAAAAAGGGAAGGGTGCATTGGGGGGCTGACCATTACTATATGAACTGCAGAAAGGTTGCACTTGAAGGCAGAAGGGGCTTTATGACTGGGACCACTAGACTGCTCTAATGTGCCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89856 lncRNA downstream 10401 26324038 ~ 26324254 (-) True G71880
TU89855 lncRNA downstream 52690 26281374 ~ 26281965 (-) True G71879
TU89852 lncRNA downstream 66248 26267867 ~ 26268407 (-) True G71876
TU89851 lncRNA downstream 68439 26265731 ~ 26266216 (-) True G71875
TU89850 lncRNA downstream 90842 26243544 ~ 26243813 (-) True G71874
TU89953 lncRNA upstream 597268 26932268 ~ 26932637 (-) True G71961
TU90016 lncRNA upstream 950420 27285420 ~ 27304597 (-) True AMCG00014693
TU90042 lncRNA upstream 1000695 27335695 ~ 27342750 (-) False AMCG00014692
TU90058 lncRNA upstream 1083816 27418816 ~ 27419045 (-) True G72049
TU90102 lncRNA upstream 1195296 27530296 ~ 27530643 (-) True G72089
AMCG00014666 mRNA downstream 174367 26154064 ~ 26160288 (-) True AMCG00014666
AMCG00014662 mRNA downstream 298828 25901904 ~ 26035827 (-) True AMCG00014662
AMCG00014663 mRNA downstream 432961 25901449 ~ 25901694 (-) True AMCG00014663
AMCG00014658 mRNA downstream 482684 25774969 ~ 25851971 (-) True AMCG00014658
AMCG00014659 mRNA downstream 570736 25753848 ~ 25763919 (-) True AMCG00014659
AMCG00014675 mRNA upstream 1175 26336175 ~ 26336979 (-) True AMCG00014675
AMCG00014671 mRNA upstream 11500 26346500 ~ 26360991 (-) True AMCG00014671
AMCG00014673 mRNA upstream 69082 26404082 ~ 26428529 (-) True AMCG00014673
AMCG00014674 mRNA upstream 93681 26428681 ~ 26480278 (-) True AMCG00014674
AMCG00014672 mRNA upstream 187096 26522096 ~ 26539562 (-) True AMCG00014672
TU87063 other downstream 14672162 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 15536508 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 17017488 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 17950431 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 18176065 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 1994739 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 3054290 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 5928167 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 6262462 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 6262462 32597462 ~ 32619149 (-) False G73127

Expression Profile