RNA id: TU89953


Basic Information

Item Value
RNA id TU89953
length 370
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G71961
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 26932268 ~ 26932637 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAAATATCCTACAGGTGCAAAGGAAAACACCGAACAACGCATGCAGGGCAGAATTAGGCCAATACCCATTATTAATCAACATACACAAAAGAGCAATTAAATTCTGGCTCCATCTAATAAACAGCGACACACACTCCTACCACCACAAGGCCCTGCAATGCCAAGAGCTGAACCCAGAGAGGAGCCCCCTCAGCCAGCTGGTCCGCAGGCTCACTGCGCAGACACACACCGACACCGGCCAGCCTCaggacagcaacacacacatgcacacaatcagAGTCAACCAAATTATCACACAGCACAAAGAAAACTACATCACCCAttgggaaacacacacacaagcacaaagtAAACTGCAGTGCTTTTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89858 lncRNA downstream 597268 26334655 ~ 26335000 (-) True G71882
TU89856 lncRNA downstream 608014 26324038 ~ 26324254 (-) True G71880
TU89855 lncRNA downstream 650303 26281374 ~ 26281965 (-) True G71879
TU89852 lncRNA downstream 663861 26267867 ~ 26268407 (-) True G71876
TU89851 lncRNA downstream 666052 26265731 ~ 26266216 (-) True G71875
TU90016 lncRNA upstream 352783 27285420 ~ 27304597 (-) True AMCG00014693
TU90042 lncRNA upstream 403058 27335695 ~ 27342750 (-) False AMCG00014692
TU90058 lncRNA upstream 486179 27418816 ~ 27419045 (-) True G72049
TU90102 lncRNA upstream 597659 27530296 ~ 27530643 (-) True G72089
TU90167 lncRNA upstream 903702 27836339 ~ 27837927 (-) True G72139
AMCG00014686 mRNA downstream 28081 26902221 ~ 26904187 (-) True AMCG00014686
AMCG00014679 mRNA downstream 233643 26681180 ~ 26698625 (-) True AMCG00014679
AMCG00014678 mRNA downstream 286336 26643240 ~ 26645932 (-) True AMCG00014678
AMCG00014672 mRNA downstream 392706 26522096 ~ 26539562 (-) True AMCG00014672
AMCG00014674 mRNA downstream 451990 26428681 ~ 26480278 (-) True AMCG00014674
AMCG00014688 mRNA upstream 47484 26980121 ~ 27034019 (-) True AMCG00014688
AMCG00014689 mRNA upstream 246466 27179103 ~ 27189518 (-) True AMCG00014689
AMCG00014693 mRNA upstream 365814 27298451 ~ 27304500 (-) False AMCG00014693
AMCG00014692 mRNA upstream 405061 27337698 ~ 27369527 (-) True AMCG00014692
AMCG00014700 mRNA upstream 440435 27373072 ~ 27377772 (-) True AMCG00014700
TU87063 other downstream 15269775 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 16134121 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 17615101 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 18548044 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 18773678 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 1397102 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 2456653 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 5330530 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 5664825 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 5664825 32597462 ~ 32619149 (-) False G73127

Expression Profile