RNA id: TU89992



Basic Information


Item Value
RNA id TU89992
length 498
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G71995
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 27026775 ~ 27027272 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ccaaaacagccctgacccgtcgaggcatggactccactagacctctgaaggtgtgctgtggtatctggtaccaagacgttagcagcagatcctttaagtcctgtaagttgcgaggtggggcctccatggatcggacttgtttgtccagcacatcccacagatgctcgattggattgagatctggggaatttggaggccaagtcaacaccttgaactcgtgattcatcagaccagatcaccttcttccattgctctgtggtccagctctgatgctcatgtgcccattgtaggcgctttcggcagtggacaggggtcagcatgggcaccctgactggtctgcggctacgcagccccatacgcaacaaactgcgatgcactgtgtgttctgacacctttctatcagaaccagcattcactttttcagcaatttgagctacagtagctcgtctgttggatcggaccacacgggccagccttcgctctccacgtgcatcaatg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU89956 lncRNA upstream 73522 26952296 ~ 26953253 (+) True G71963
TU89946 lncRNA upstream 115538 26904877 ~ 26911237 (+) True AMCG00014687
TU89834 lncRNA upstream 795210 26231219 ~ 26231565 (+) True G71859
TU89798 lncRNA upstream 1015775 26010799 ~ 26011000 (+) True G71826
TU89783 lncRNA upstream 1067073 25952233 ~ 25959702 (+) True G71817
TU90084 lncRNA downstream 447792 27475064 ~ 27479444 (+) True G72072
TU90207 lncRNA downstream 1213294 28240566 ~ 28297484 (+) True G72169
TU90212 lncRNA downstream 1270397 28297669 ~ 28300813 (+) True G72173
TU90255 lncRNA downstream 1310019 28337291 ~ 28341717 (+) True G72208
TU90338 lncRNA downstream 1499516 28526788 ~ 28578733 (+) True G72273
AMCG00014690 mRNA upstream 46475 26977435 ~ 26980300 (+) True AMCG00014690
AMCG00014683 mRNA upstream 52393 26966745 ~ 26974382 (+) True AMCG00014683
AMCG00014685 mRNA upstream 64898 26925834 ~ 26961877 (+) True AMCG00014685
AMCG00014687 mRNA upstream 117401 26908358 ~ 26909374 (+) False AMCG00014687
AMCG00014684 mRNA upstream 125961 26890732 ~ 26900814 (+) True AMCG00014684
AMCG00014691 mRNA downstream 294342 27321614 ~ 27337656 (+) True AMCG00014691
AMCG00014701 mRNA downstream 455816 27483088 ~ 27491264 (+) True AMCG00014701
AMCG00014705 mRNA downstream 675812 27703084 ~ 27714268 (+) True AMCG00014705
AMCG00014704 mRNA downstream 808247 27835519 ~ 27841866 (+) False AMCG00014704
AMCG00014706 mRNA downstream 816118 27843390 ~ 27861363 (+) True AMCG00014706
TU89430 other upstream 4171129 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 8752415 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 9578322 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 10557662 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 10893973 16129525 ~ 16132802 (+) False AMCG00014508
TU90165 other downstream 808231 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 841431 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 1275101 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 2824178 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 3737079 30764351 ~ 30805741 (+) False AMCG00014777

Expression Profile