RNA id: TU90084


Basic Information

Item Value
RNA id TU90084
length 1560
lncRNA type inter_gene
GC content 0.41
exon number 6
gene id G72072
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 27475064 ~ 27479444 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tTGGCATACAACATCCAACAGATCTACAAATGTGAATCTCCAGCTCAGTCGAAATAACGGGAATCTACCTCATCATATCCAAACAGCCAGAGCCGGGGAGTCTGGTAGTACTTGTCATAAGTGATGTAGAGGTCGTAGGTTCGAGTCTGTAGAATGGCATCTTCCCCTCCTGCATCTTTGGCTTTGTTAATTTCCACTACTCTACTGGTGTCCAAAGTTGCcTCATCCGTTTCCAGAAGCCCACTCTCTTCATATTCTTCCATGTCAGCTGGTTCTccttcatcatcttcatcatcatcatcaccacaAGCCACTGAGTGGGCATTCAGATTCATTTTTTCCTTATTGTCCAATGTGATTTCTCGGACCGCTTCCGTGACACCAGATACTCCTGAGTTGTGAAAGGTGTCCACCCAGCCTCCGTCCCCATCGTCCTCCTCTATGATGGCCTCCAGCTCATCTGAGTACTCCATCTGTTTACATCGCTTGTAGCACGGGACTTGCGTGTTAATAAAAACTGCCTATCCTTCGGCAAATATGGCTTCACCTTCGCTTCTTCCCCAGAAGCCCTACAAAAACATAACCCACAAGTTATTAAGTGACCCTACATTATGTAGCTACTTTATAACTCAATTTGATCATAATTAGCTCTTCCAAAGAACAGCTGTCAACAAGCCTGGAGGATACTGCCATGATGATACTTAATGGACGATTCGATATACCAAAATTAGATTGAAACAGACGGAATGCCTAGTGCAAAAGTACATTTCAAGTGTGTATTGTATTCACAGAGTAAATCTTCTAAGTTTATCATATCATTTAGTttatcatgtccagctcattctatttACAAACCAGGAATCAGAGATCGAAAAATATGCTGTGACGTCACCGGGGTGcgaactctggagctgctttgctgggagtcaatggagaaaatcagaaaagtcattaaaaaactaaaatgttatgACATTCGATGTGCTGTAGCCTACACGGCAGtgcatgtaataaaataataaaacttactccacagaatatgtttctactgaTAGAATAGCCTGAGATTTTGGGATTTTCTGTGGAGTTCCCATTTAATTGCATGCAAAATATTTCAGATAAAAGTTTAATTCTAGTctaaagtatgtttttaattagctCAGAAAAAGGCCAAGAGTTCTCAAGGCTCAagaggttgaaaataaaaatggccaCTTAACTTCCTGACTATGCTATTAGCCATACAGAGTGGTATAATTGCAGGGAAGATTAAGTTAGGCCAAAACTGAGATGTAGCAATGTTTTCCTGAAAAGATGtagtttaataaatgaaaagattaaacaaataacactcAGTTTTACACATTTCCCCTTTCCCTGGGGGGAAACAGTCACATGCACTCTTgcttatgaaatatatattatatattttacaactcTCCTCCACAGTGGAATGTACTTCTTGTTTGTAAGTTTCTGTTCCCTACCTCCTTGCCTTAGCACTCACCATTTCCATGTAGGGCAGTGATGGACGAGGTGATCCCCGGCTGCTACAAACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89992 lncRNA upstream 447792 27026775 ~ 27027272 (+) True G71995
TU89956 lncRNA upstream 521811 26952296 ~ 26953253 (+) True G71963
TU89946 lncRNA upstream 563827 26904877 ~ 26911237 (+) True AMCG00014687
TU89834 lncRNA upstream 1243499 26231219 ~ 26231565 (+) True G71859
TU89798 lncRNA upstream 1464064 26010799 ~ 26011000 (+) True G71826
TU90207 lncRNA downstream 761122 28240566 ~ 28297484 (+) True G72169
TU90212 lncRNA downstream 818225 28297669 ~ 28300813 (+) True G72173
TU90255 lncRNA downstream 857847 28337291 ~ 28341717 (+) True G72208
TU90338 lncRNA downstream 1047344 28526788 ~ 28578733 (+) True G72273
TU90404 lncRNA downstream 1352312 28831756 ~ 28831975 (+) True G72329
AMCG00014691 mRNA upstream 137408 27321614 ~ 27337656 (+) True AMCG00014691
AMCG00014690 mRNA upstream 494764 26977435 ~ 26980300 (+) True AMCG00014690
AMCG00014683 mRNA upstream 500682 26966745 ~ 26974382 (+) True AMCG00014683
AMCG00014685 mRNA upstream 513187 26925834 ~ 26961877 (+) True AMCG00014685
AMCG00014687 mRNA upstream 565690 26908358 ~ 26909374 (+) False AMCG00014687
AMCG00014701 mRNA downstream 3644 27483088 ~ 27491264 (+) True AMCG00014701
AMCG00014705 mRNA downstream 223640 27703084 ~ 27714268 (+) True AMCG00014705
AMCG00014704 mRNA downstream 356075 27835519 ~ 27841866 (+) False AMCG00014704
AMCG00014706 mRNA downstream 363946 27843390 ~ 27861363 (+) True AMCG00014706
AMCG00014703 mRNA downstream 389271 27868715 ~ 27879755 (+) False AMCG00014703
TU89430 other upstream 4619418 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 9200704 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 10026611 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 11005951 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 11342262 16129525 ~ 16132802 (+) False AMCG00014508
TU90165 other downstream 356059 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 389259 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 822929 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 2372006 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 3284907 30764351 ~ 30805741 (+) False AMCG00014777

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00063433 True 1706 mRNA 0.42 12 NC_007117.7 7109954 ~ 7123210 (-)