RNA id: TU90174


Basic Information

Item Value
RNA id TU90174
length 4158
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G72146
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 27856739 ~ 27861375 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAGATTAAGTGATTCTATTCATCTTTATTTGGGGATTTAGGGACACTCATAGCTTGAAGACACAGAAAAGCAAGTTCACAAGCGTACATCTAAAATGTTAACAGCAGGAGACAGTCCTTTGACAGACTCCTTTAATCCTGTTTGCCAAAGACATCTTCAACTAAGATGGGATAGCTGATACCTTTCACTGCCGGGCCTGTGGGTTCTTCGCTCCAGTCTACGTCATACTGAAAACAACAAGCATGGGGACATGGATTAAGGAGGGGAAGGCATGTGAAATACAGCCAGCTGAGGATGAATGGCAGATCCTCGCAGTGTCTTTCTGCACATGGAGCTCATATGTCAGCCTTTTTTCTAGTGTACTCACCTAATACTAAATACCTGCAAAGCCTTTTCAGGTGGCAGTTCAATAACAATACGACAAATTCAAATACCATGGCCTGTACGTGGCAGCTGCTAGGGGAGACACTGTTGTTGACATGCAGGCTCGCGCATAACATTCACTGTGACATCAGTTTCCAGGGATACTAGTCTGGTTTAATCTCAAAACGACAAGAAGCCACGAGGTGTAAAGTTGGTGGTAAAGTTACAGACTACGGTATCCTGAAAGGACGAAAGAGCTAGTGCAGTGTGAAACAAGCATGTGTGAGCATTTCTAGAGAGGAACGGGCTATACACAGCAACCAGAAAGCACTCTGTGAATGGCCCCTGGGTCCCTTCCATCAGAGGCAGCGGACAGAGCAGAAGCGGACGAGTGCCCAGACAGAACGGAGCGACAGCTGGCAACAGCAGCTCAGTGTTGTTCAGCGCGTCCCCAGAGCTTCTCCATAAAGGCATTGTAGTTCACGGTCGAGAGGCCGAgaggtttaaatgtaatttgcaggGCCGAGAAAGGCTGGAGGATGGTAACGCACAGCAcaggaagaagaaagagaagagaaggaaaaagagATAAAATGTTAGCATTTCCATAAAAGGGACAGCCTTGAAACGGATCATTCACCTCATAATAAAGCGAAGCACGGTGACTTCAAAGTCAGGGATATTGTTGCTTCTGCCATAGATGTCTATGTTTTCTCTGTGTTATACATGGCCCATAGCTCTTTATGCACTGGATCTAGACCAAGCAGTGAAGGTCAAGCCACACCCATTCCCACAGGTTGCTGGGGGCACCACTGACACTACACAACTTGTTGTATTTGAAGTGTGCGCTTATGGAGCAGAGATGTAGCTCAAAGACAGCTCTTTcctaaaggagaaaataaatatgcttcCGACTGAGACAAAATCAGAGAGCTTGAGGAATGTCATAACCCTGGTCACCACTCTTGGTTACACACATCTCATTAGTCTTAAGAACAGTGCGTTTCAGTGGATGGAGGGAAGGCAATAAGAATCATGTTTTACCATCCTTGATAAATCTGTCAAAGTGTCCTGTCTCAAAGTCCATAtctgactattattattattttctctttggtCTGAGAACTGAGGTATTGGTGCAAAATATTGgttttaatttgcttgtttGAAACGCCAACATGTAAGTAAGATTCCCCTAGACTGGGTGGAGTATTTAACCCCGACTTCCACATTCAGGAACCTGTCTTTTGATGTAGCGGCTTCGGCAGTTCAAATCTAAAGTCTGACCCTATACACCACATAGGCCACCCATTATGTCTGAGGCCCACAGTTGTTCCTTCCCCCCTGCTTTCTCCACATTCACTCACTCAGAGCTCTGACTCACCTTGTTgggagactgagagagaggggttggTGCTGGATTGTCTCTCCAGTTTATCGCTGACAGGAAAGCACCGTAATCTACTTCTTCTTTATCGTTTGCAAACCTAAACTTTGCTAGGGTGGCTCTCAGAAGATCATCAGCCAATGGAAGTTTGAAGGCCTTGCAAATAGTCCTGGATTTCTGAGCAGACAACAGTCCAGTCCTAAAAACAGGTGATGGAAATGACACAGATCACAGACTGACAAAGCTCAATTTAATTCCCAATTCCATCAAGCTACATGACTATCAACATATTCTTCCTTACTGAGTGACTGTATACTGTGGCTATCAATAGCTAATCAATTCTACTGAATACCAAATATCCAGAGAAAAGTAAGGCATTGCCCCCCAggtaataatataaaagataATTACTATACTTTAAGTGaagttatttaaatttaaaattatatcagTCTGAAGTCaaccatttatttacttttcatttccTAGTTTGAACAATCTAGAGATGTGCAATGTCTTCTTTGTTTGGAAGAAATAGTTAtgatgtatacattaaaaatctCAAAAAGATGCATGGCTAATAAGAAAAAGTGGCAATATACATAGTGACCGTAAATCCAATCAGAGGCTGgtgtaaatattaatgatttattagCAAAGCATGTTTAGATCACTTAGCTGTAATAGCAAGCAACCTTTACACTGAGGGTTGCTGGTTCAAGTTATattcctttttgtttaattactgaattaaacacaatgtcaaaagaaaaaaatacaggacCACTTTGCATTTCCTGCATTTTCATCAATGGTCatgaaaaggagaagaaaacattgataaaatgtgcttcaaatataaaaactgtCATTAATaagacaaaatcaaatttaGATTATCCCCCCCTCAGTTACTGAGCACCGTCACAACTGAAATGTCTGCTTTTATGGGGACTAACACACAAGCAATGATGCAATATGAAAAACTTCCAAAATAAAGAGGAATGTGGTGGTGTCTGAATAATTGTTGAGGGCGCTCTATGAGGTGTGAGAAACAGgattattttaagtattgtttCATCATTTGCAAAGGGTGTCAATAGCATGCATCTCTATTGAGATGGCGGTGTCAACAGAATTGGTGTCTGCCAACACAATGGTGTCTTCTTTATCTTCCTAAAATAAACTGGAATGTGCAGGAACAGACTGACCACGTCAGCTCCTTAGTCGGCCACAAGTCTTCATATGAACACAAAAGAGAAGCTACAGAAAAAGTCATTATTACTGCCCTATAGCTGGCACCTTAGACACAGATAGTGTTTCCAGAGGTAGGATGCCTTTAACTGTATGTTTTgtcatattatttgtaatgtagttccaaattaaaataaaatataaaatgttaaatctcTTAGATCAGAACACAATATTAGTTAATGTACATGTGACCAAGTGTAAAGCACAGTTGACCTTATAACCTAAacctaaactaaactaaatcacCGTTGTGCATTGTGTATTTCTAATCAACACAACATTTTGGTCTGAACAGCTAGTGGAGGGAGTGTTTTGATTGTGCCATgtaaggagaaaagaaaaactattaccttttttgggggggtgggggataatttcttaattaatgtGATTATTTAAGAACTGGTTGACATCTACgataaccatttaaaatgtgtcaacTGCCTACAATAGAAAACGTTAATTGATCCAAATCATCATTAACTTGCATCCCATCCCATTAATACACTTCTATGTTTAGAATCAATAATGCTCCTGTCACAGGAGATATAGCTACTGTGAATATTTCATTAACTGTAGAGAGAGTAGCTAGGAAATAAAATCTCTCaacaaaatcatgttttgtcTTGGTTGCAAACAGACCCGAGGCGACTGTAAAAGACATAGTGCTGTTCTGTACAGCTAAACATGACCTTATTCATTTCCCGTCCTGGGGTTCTTGCCTGGCTGTAGGAATCATCTGTTTTTAATGCTACACTTAAACCACTGTAACTAATAGGCGAATGACTATCTGGCTACACAGAGTCTGGTGTGGTTTGACTGTTTGCAGATTGATGGCAATTTTATTTGGTCTCCGAAACGAGATGCTGGCCTCAGAGATGGTGAAAGTTGAAAAAGGTTAAAGGGAGCTTCAATGGAGGAGTGTTCCTGAGGCCAGGGGACGCGGCGGTACCTGTCTTGGTCATCGTGCACGAAGGAGTCGACCATTTGCTGGAAGCTTTCAAACTGCTTCTTCCTCAGCTGCTCCTGGGCCAGGGACAGCAGGTAGCCCAGATCCGACCCAGGTGTCTCTGGGGAACCATAGTGGCGCCCAACCACCATGATCTCATGCTCAGACAGCTGGTCACCTGCAACCTCAGCCAGCAGGTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90167 lncRNA downstream 18812 27836339 ~ 27837927 (-) True G72139
TU90102 lncRNA downstream 326096 27530296 ~ 27530643 (-) True G72089
TU90058 lncRNA downstream 437694 27418816 ~ 27419045 (-) True G72049
TU90042 lncRNA downstream 513989 27335695 ~ 27342750 (-) False AMCG00014692
TU90016 lncRNA downstream 552142 27285420 ~ 27304597 (-) True AMCG00014693
TU90346 lncRNA upstream 717034 28578409 ~ 28578734 (-) True G72280
TU90377 lncRNA upstream 785120 28646495 ~ 28646811 (-) True G72305
TU90378 lncRNA upstream 794191 28655566 ~ 28655765 (-) True G72306
TU90379 lncRNA upstream 796702 28658077 ~ 28658299 (-) True G72307
TU90391 lncRNA upstream 813006 28674381 ~ 28766089 (-) False G72317
AMCG00014707 mRNA downstream 94326 27717966 ~ 27762413 (-) True AMCG00014707
AMCG00014702 mRNA downstream 347597 27492028 ~ 27509142 (-) True AMCG00014702
AMCG00014697 mRNA downstream 374059 27470289 ~ 27482680 (-) True AMCG00014697
AMCG00014696 mRNA downstream 389885 27441353 ~ 27466854 (-) True AMCG00014696
AMCG00014694 mRNA downstream 415810 27431251 ~ 27440929 (-) True AMCG00014694
AMCG00014712 mRNA upstream 200253 28061628 ~ 28204961 (-) True AMCG00014712
AMCG00014713 mRNA upstream 358017 28219392 ~ 28220486 (-) True AMCG00014713
AMCG00014715 mRNA upstream 427980 28289355 ~ 28315398 (-) True AMCG00014715
AMCG00014716 mRNA upstream 479776 28341151 ~ 28380053 (-) True AMCG00014716
AMCG00014717 mRNA upstream 626254 28487629 ~ 28490563 (-) True AMCG00014717
TU87063 other downstream 16194246 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 17058592 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 18539572 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 19472515 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 19698149 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 468364 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 1527915 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 4401792 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 4736087 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 4736087 32597462 ~ 32619149 (-) False G73127

Expression Profile