RNA id: TU90207


Basic Information

Item Value
RNA id TU90207
length 2894
lncRNA type sense_over
GC content 0.38
exon number 2
gene id G72169
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 28240566 ~ 28297484 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCCCGTACCCATCTGCTTAAGTAAAAGTGTTCTCATccctatctttttttttttttttttttTGCatttcaaactttttattttcgATAAAATCATACAATAAACGCACAGCTGAGTCTTCTCATGCAGTGCATAGCTTCTAAACTAGTACATAAAGCAAATACTAAATCTATGGAACTCAGGTGCTCAACTTCAAACATTTAGCAAGTTAGAAAGCTTTTTCCACCGAGCATCCCCTACCCCCCACTCCCATGAGCTCTGTCCTGCTGCTACCCTTGGTAAGACTTATTGCTGCATCTGAGACTTGCTAAATGTTCAAGAAAAACACCCGAGACTccaaatatgcaaatgcaacaATAGAGAATAACCACATGTTTTAAGATTGCCATGTGCCAGACgttcactgaaaacaaaaaaaaaaaaaaaaaaaaaaaaacgcaaacACACGATTGGAGAACCTGGACACTTTGAACTGATACATTTAGGAAATGTGTTTCTATTATTTTGATAACTTTTATCCAAACCTTggcatgtttttcaaattttgattgCCAATTTGTACTTCTATAGAAACGTTTGGCCATGAGGCCAGTAACAGGTGTGGATTTTGACCGAGTCCAATATGACTTTAACATTAAAAAGCTCACACTACCCCGAAATATATAAATTTCACGCATACGGGTGACATTCAACATTCAAGTGCCAGTGTTTTTGTACTGTCTTTTGGTCAAGTTTCTTGAAACTTTCAAAGAATCACTTTTAggcttataaaaataaatatttctcaaaaaatgcttaataaattacacaaaactaGCAGCAAAAAAGTAGAATCTAGAAATCTGTGTGCAAATAGCTAAATTCCCAACTGCTAATCCCCCTGGTCCCAAATAAATCCTGTTTAAGTATCAAGCCCCTTCCCCTTTGTAAACAAGCTGCGTTTCACAATCTCCACACAATATTTGGAAGCTTAAGGACACGCACACaagacatttatataaaactctagatgtgcaataaaataatttgtaaaactTGATGGGCACGACATACAAGGGCCTAAACCTAACTTAAATAGCACCATTCATCTTAAGTTACCTCAATACTGTCAGTGCATCCGCTTcaatcattataatttttttcaagGCACAACACACTTGAGAATAAATCTATTGCACTTAAGTTAAATGCCATTTCCTCAACTCCCCCCAAGCCTTCTTAAAAGAAAAGCTAATGCTGGCTCCCTGGCCAatgattttaaatacacatcaaGGCAGATTAACTCCAAAGGAGTTTACAGCATTAATGTACCATCAGGAGGGAAAAGAAACCCAGTCTTTGGCCAGATATAGTGGAATACACAGCCAGTTTTATGCAATGGAAACCTATGCAACTCAAACGGTGGTGCACCAAACTGCACTGAATGCCACTGGCAACACCTTGTGCAGTTCTTAGTACATTTCTGACCTCTGCAATCCCTAACACAGCTTTCGTTGTTAAAGGAGCAATGTCTATAGTAAGCCGAGGATGTCTTTCGGAATTTAACGCAGCTTGAAAAGAGAATGTAtatacttttgtaataaaataaagcctgCTGCAGAATTCGTTTGTTTTATCCCCTTGACCAAAAAACACCAACACTAGCATGCGTATAAGACCGAGTCAGCCTTGTCTTTCCTGCAGGGCTGCTTCGGTGTTGTGGTCCTTATATAGCCATTCAACTTCAGTTTCAATATGGCAGGCATTTGTCATTTTAAGATCAACCATATGTAAAgtttagaaacatttaattaaaaaactatcAAGTTTCTCAATTGCCCCTTAAAAatgtttcaagaaaaaaaaaaaaaaaaaaaaaaccaaaacaaaacaccgCCCCGCTTAATGGCTAGCTTGTGGTACTTAACTAGCTGCCTTAACACTGTCAAGTCAATTGCAATAAGTGGAGAAGTTCCAGCATGTGTTTTGTCTAAAAACCAGTGCATTAAACACCAAGTTTACTTTATATGAATCTTAAGATCACACCTGGAATGGCTTTTCGAAGACTACCATATCCCTAATAGGTACCTATCCAGGATAGAGTGAGCAAAAAATCAGAACtcttcaaatacattgtttgcCACACAAGGAATCACCTTTACTCAAACGCTTCTGTGATGGTTTAACAAGCAGTTTGTGCTCAAGCCTGTATACAAATACAGGCTACCAGATAACCTGATGTCCCTGTGACAATTTGAAGTTCAAATGGAACCATGACTCACTCAAGTCATATCCCAGTATTTGCCAAGGTTTGATTTAGTACAAGCTTTTTATGCCTTACAAAAACAATTGAGATCTTGGCTACATTCAGCCAgtatgacattaaaaaataaaaattcctGTCTAAAGTTAAAGGCACAgtacattaacaaacaaatgatCCTCAgtttacaaagaaataaatgaagtgcAGTTGAAAACTAGAGTCCAAGATTCTAGGCATTATGTCAGCAGCCATGTTTGTCTCCATCTAAGGTGTGATGCTCTGGGTCTCTTGCAGGCCATCTTCAATTTGCTTTAAGCTCCCTTTAAGAATGTTTTCAGAGAATCACAGCTGGTAATGTACTGCGAGTTCTTGAAGCTACACAAGGTATAGTCTGGCTAAGTTACATGTGGTTTCCATTCAGCTAGTTTGGCATGGTGACATCCACTGCGTTTGGGTCTTTAGTTTCCCCACCAGTCAACTTGGGAGTAATTTCCTCCATAACCATCACTGCTGTAGAAGTTTCCAAAgccacctgagagagagagagagagagagagagagagagagagagagaacaattaAAGTCTGTGGAGAGGGAAGTAAACAATGTGCGAGCAATGGATCTGAACATCACAAGGATTCAATTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90084 lncRNA upstream 761122 27475064 ~ 27479444 (+) True G72072
TU89992 lncRNA upstream 1213294 27026775 ~ 27027272 (+) True G71995
TU89956 lncRNA upstream 1287313 26952296 ~ 26953253 (+) True G71963
TU89946 lncRNA upstream 1329329 26904877 ~ 26911237 (+) True AMCG00014687
TU89834 lncRNA upstream 2009001 26231219 ~ 26231565 (+) True G71859
TU90212 lncRNA downstream 185 28297669 ~ 28300813 (+) True G72173
TU90255 lncRNA downstream 39807 28337291 ~ 28341717 (+) True G72208
TU90338 lncRNA downstream 229304 28526788 ~ 28578733 (+) True G72273
TU90404 lncRNA downstream 534272 28831756 ~ 28831975 (+) True G72329
TU90400 lncRNA downstream 538798 28836282 ~ 28837910 (+) False AMCG00014729
AMCG00014709 mRNA upstream 4651 28222661 ~ 28235915 (+) True AMCG00014709
AMCG00014711 mRNA upstream 56036 28167033 ~ 28184530 (+) True AMCG00014711
AMCG00014708 mRNA upstream 321643 27891851 ~ 27918923 (+) True AMCG00014708
AMCG00014703 mRNA upstream 360811 27868715 ~ 27879755 (+) False AMCG00014703
AMCG00014706 mRNA upstream 379203 27843390 ~ 27861363 (+) True AMCG00014706
AMCG00014714 mRNA downstream 32313 28329797 ~ 28332468 (+) True AMCG00014714
AMCG00014721 mRNA downstream 109733 28407217 ~ 28441529 (+) True AMCG00014721
AMCG00014722 mRNA downstream 147492 28444976 ~ 28450107 (+) True AMCG00014722
AMCG00014720 mRNA downstream 158711 28456195 ~ 28483850 (+) True AMCG00014720
AMCG00014724 mRNA downstream 285985 28583469 ~ 28590960 (+) True AMCG00014724
TU90175 other upstream 360766 27868703 ~ 27879800 (+) True AMCG00014703
TU90165 other upstream 398695 27835503 ~ 27841871 (+) True AMCG00014704
TU89430 other upstream 5384920 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 9966206 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 10792113 17403511 ~ 17448453 (+) False AMCG00014553
TU90214 other downstream 4889 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 1553966 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 2466867 30764351 ~ 30805741 (+) False AMCG00014777
TU90965 other downstream 2680732 30978216 ~ 30978825 (+) True G72785
TU90966 other downstream 2682086 30979570 ~ 30980252 (+) True G72786

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00073354 False 5007 mRNA 0.45 18 NC_007120.7 33334501 ~ 33354738 (+)
grasscarp (Ctenopharyngodon idella) TU570457 True 2294 lncRNA 0.41 2 CI01000340 19448439 ~ 19451285 (-)