RNA id: TU90377


Basic Information

Item Value
RNA id TU90377
length 317
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G72305
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 28646495 ~ 28646811 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtagttctgggctgattcctcagcattctcatgatcattgaaactccacgaggtgagatcttgcatggagccccagaccgagggagactgacagttattttgtatttcttccatttgcgaataatcgcaccaactgttgtcaccttctcaccaagctgcttggcgatggtcttgtagcccattccagccttgtgtaggtctacaatcttgtccctgacatccttggacagctctttggtcttggccatggtggagagtttggaatctgattgattgattgcttctgtggacaggtatcttttatacaggtaacgagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90346 lncRNA downstream 67761 28578409 ~ 28578734 (-) True G72280
TU90174 lncRNA downstream 785120 27856739 ~ 27861375 (-) True G72146
TU90167 lncRNA downstream 808568 27836339 ~ 27837927 (-) True G72139
TU90102 lncRNA downstream 1115852 27530296 ~ 27530643 (-) True G72089
TU90058 lncRNA downstream 1227450 27418816 ~ 27419045 (-) True G72049
TU90378 lncRNA upstream 8755 28655566 ~ 28655765 (-) True G72306
TU90379 lncRNA upstream 11266 28658077 ~ 28658299 (-) True G72307
TU90391 lncRNA upstream 27570 28674381 ~ 28766089 (-) False G72317
TU90392 lncRNA upstream 115145 28761956 ~ 28766089 (-) True G72317
TU90393 lncRNA upstream 120789 28767600 ~ 28768329 (-) True G72318
AMCG00014718 mRNA downstream 151469 28494507 ~ 28495026 (-) True AMCG00014718
AMCG00014719 mRNA downstream 152009 28494106 ~ 28494486 (-) True AMCG00014719
AMCG00014717 mRNA downstream 155932 28487629 ~ 28490563 (-) True AMCG00014717
AMCG00014716 mRNA downstream 266442 28341151 ~ 28380053 (-) True AMCG00014716
AMCG00014715 mRNA downstream 331097 28289355 ~ 28315398 (-) True AMCG00014715
AMCG00014730 mRNA upstream 283554 28930365 ~ 28951352 (-) True AMCG00014730
AMCG00014731 mRNA upstream 349125 28995936 ~ 29013055 (-) True AMCG00014731
AMCG00014732 mRNA upstream 376967 29023778 ~ 29031908 (-) True AMCG00014732
AMCG00014735 mRNA upstream 704937 29351748 ~ 29383448 (-) True AMCG00014735
AMCG00014742 mRNA upstream 807231 29454042 ~ 29463876 (-) True AMCG00014742
TU90285 other downstream 314013 28329739 ~ 28332482 (-) True G72236
TU87063 other downstream 16984002 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 17848348 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 19329328 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 20262271 8383285 ~ 8384224 (-) True G69156
TU90581 other upstream 742479 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 3616356 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 3950651 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 3950651 32597462 ~ 32619149 (-) False G73127
TU91480 other upstream 4155047 32801858 ~ 32806295 (-) True AMCG00014824

Expression Profile