RNA id: TU90378


Basic Information

Item Value
RNA id TU90378
length 200
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G72306
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 28655566 ~ 28655765 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

catCTTCATCCATATTGTAAAccgcgctttcatttctgcatcggcccagtttttacctctaacgccggcatttgtgattgtactgctcagctcaatataactgcatttcggattggatagtaaacagctggtctcgttttaaaatgcattgatttgaatggaaacctgctttggttaaatttatatcgttttaatgcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90377 lncRNA downstream 8755 28646495 ~ 28646811 (-) True G72305
TU90346 lncRNA downstream 76832 28578409 ~ 28578734 (-) True G72280
TU90174 lncRNA downstream 794191 27856739 ~ 27861375 (-) True G72146
TU90167 lncRNA downstream 817639 27836339 ~ 27837927 (-) True G72139
TU90102 lncRNA downstream 1124923 27530296 ~ 27530643 (-) True G72089
TU90379 lncRNA upstream 2312 28658077 ~ 28658299 (-) True G72307
TU90391 lncRNA upstream 18616 28674381 ~ 28766089 (-) False G72317
TU90392 lncRNA upstream 106191 28761956 ~ 28766089 (-) True G72317
TU90393 lncRNA upstream 111835 28767600 ~ 28768329 (-) True G72318
TU90398 lncRNA upstream 119516 28775281 ~ 28775737 (-) True G72323
AMCG00014718 mRNA downstream 160540 28494507 ~ 28495026 (-) True AMCG00014718
AMCG00014719 mRNA downstream 161080 28494106 ~ 28494486 (-) True AMCG00014719
AMCG00014717 mRNA downstream 165003 28487629 ~ 28490563 (-) True AMCG00014717
AMCG00014716 mRNA downstream 275513 28341151 ~ 28380053 (-) True AMCG00014716
AMCG00014715 mRNA downstream 340168 28289355 ~ 28315398 (-) True AMCG00014715
AMCG00014730 mRNA upstream 274600 28930365 ~ 28951352 (-) True AMCG00014730
AMCG00014731 mRNA upstream 340171 28995936 ~ 29013055 (-) True AMCG00014731
AMCG00014732 mRNA upstream 368013 29023778 ~ 29031908 (-) True AMCG00014732
AMCG00014735 mRNA upstream 695983 29351748 ~ 29383448 (-) True AMCG00014735
AMCG00014742 mRNA upstream 798277 29454042 ~ 29463876 (-) True AMCG00014742
TU90285 other downstream 323084 28329739 ~ 28332482 (-) True G72236
TU87063 other downstream 16993073 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 17857419 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 19338399 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 20271342 8383285 ~ 8384224 (-) True G69156
TU90581 other upstream 733525 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 3607402 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 3941697 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 3941697 32597462 ~ 32619149 (-) False G73127
TU91480 other upstream 4146093 32801858 ~ 32806295 (-) True AMCG00014824

Expression Profile