RNA id: TU90428


Basic Information

Item Value
RNA id TU90428
length 286
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G72353
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 28981122 ~ 28985576 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTCAGTTGGTGTGTtgtaacaagaaataaataaccttgTGTTCAAGCCATCTAACAGGATTAATATGTATACAAGACATGGAACAAAAGTCTTCTTTCGTTTGGTTTCGGAATCACAATGATGCCTGCAACTTTGCTGACTAAACATTTACTATTGACTGCATTTTGGCTCATCGTCATCTTTAACACCTCCTGCATATTCAGTAATCCCATTTTGTGTTCACTAATGATTTGCAAAGGCAAGattcaaggcacccagtgccagaggcagcaaGCAACCCCAAAC

Function

GO:

id name namespace
GO:0017001 antibiotic catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90416 lncRNA upstream 59832 28918976 ~ 28921290 (+) True G72341
TU90400 lncRNA upstream 143212 28836282 ~ 28837910 (+) False AMCG00014729
TU90404 lncRNA upstream 149147 28831756 ~ 28831975 (+) True G72329
TU90338 lncRNA upstream 402389 28526788 ~ 28578733 (+) True G72273
TU90255 lncRNA upstream 639405 28337291 ~ 28341717 (+) True G72208
TU90429 lncRNA downstream 4031 28989607 ~ 28991299 (+) True G72354
TU90496 lncRNA downstream 151553 29137129 ~ 29137353 (+) True G72409
TU90507 lncRNA downstream 171449 29157025 ~ 29160425 (+) True G72415
TU90518 lncRNA downstream 206395 29191971 ~ 29192278 (+) True G72426
TU90536 lncRNA downstream 263670 29249246 ~ 29252705 (+) True AMCG00014739
AMCG00014728 mRNA upstream 64488 28905901 ~ 28916634 (+) True AMCG00014728
AMCG00014727 mRNA upstream 90154 28881917 ~ 28890968 (+) True AMCG00014727
AMCG00014729 mRNA upstream 143213 28797049 ~ 28837909 (+) True AMCG00014729
AMCG00014725 mRNA upstream 201832 28767435 ~ 28779290 (+) True AMCG00014725
AMCG00014726 mRNA upstream 215032 28695811 ~ 28766090 (+) True AMCG00014726
AMCG00014734 mRNA downstream 110553 29096129 ~ 29110638 (+) True AMCG00014734
AMCG00014733 mRNA downstream 135375 29120951 ~ 29129042 (+) True AMCG00014733
AMCG00014739 mRNA downstream 262299 29247875 ~ 29256354 (+) False AMCG00014739
AMCG00014738 mRNA downstream 284062 29269638 ~ 29279149 (+) True AMCG00014738
AMCG00014737 mRNA downstream 322364 29307940 ~ 29321592 (+) True AMCG00014737
TU90214 other upstream 677049 28302373 ~ 28304073 (+) True G72175
TU90175 other upstream 1101322 27868703 ~ 27879800 (+) True AMCG00014703
TU90165 other upstream 1139251 27835503 ~ 27841871 (+) True AMCG00014704
TU89430 other upstream 6125476 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 10706762 18271854 ~ 18274360 (+) True G71004
TU90740 other downstream 865874 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 1778775 30764351 ~ 30805741 (+) False AMCG00014777
TU90965 other downstream 1992640 30978216 ~ 30978825 (+) True G72785
TU90966 other downstream 1993994 30979570 ~ 30980252 (+) True G72786
TU90967 other downstream 2004487 30990063 ~ 30996363 (+) True G72787

Expression Profile