RNA id: TU90999


Basic Information

Item Value
RNA id TU90999
length 2204
lncRNA type inter_gene
GC content 0.42
exon number 10
gene id G72815
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 31278087 ~ 31287434 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cttcatttgtttaattaaaaataatcgtTTCAGGCagtgttcttttttgttttttttaagatagaCAGGAGTGTGcgataattaaattatgaaggAAGAAGTGGATCTTTATTAGTAACTCTGGACACACTGATAATGTACATGTCTCTCTGCCAGTGCATTCAAAGCttccttacaaaaataaatccatacaaaGTAGCCACAATCAGAAACTGAGAAGGTTACCATTGTTTAtagttttacaaaatatacattccaTTCTTTTAAGGGGAGAGGGACTTTTTTCAAGACCCATATATACTTTCATGTAAGGTATCTGTTTGGACTTAAAACCACATATTTTAAACAGCCCCCAAACagtaaatatgcaaaaaaatattttaaaccaataaacacATGATGTCTGTTCCTATATGTACAAGCACAATATCCTGCCAGTATGCTTTGCAGGACAGACTCcagacattaatttaattaaagcagttCCACATGCCTAAATTAGAGACAGTTGTGATTTGCTGTCAGCTGTTTTAGGGGATAtctgttcttgttttgattCTGTCATTTTCAGTAAAGATAAAGAGAAGTactaaaatgtacacaattctCAAAAATATTGTCCAAAGGTTGATTAATCAttttctcgtttttttttttctgatattaCTCCAATTGACAGGAGCACCTTGTTTTAACCCGATTCTTACAATGAGACGGATCTTTCGACAATCCAAAAGACACATCACGCTTTAGCCCTTAACCCAGTTCAGACAATCAGACTCTCACACATGACCAATTTGAGATTTGATTATAAACCTTTTCAATTTGGCCTTTTTCCAATGTATTGAAGGCTTTTGTTCTGAAAGCCTGGCTCTTTGCTGTGGTGGATTTGAATCAGCTGAGGCGGTGATCGAATCTGGCTGTTATCTGCGTGAGTGTTAAATTTCCCTTTGGGTTCACCACCATATTGAACTAATCCTGAATTTGATCCCATCACTTGCCAGATGGCTTATCACTGGCTGCCTCATTCAGACAGGTCTTCATGTTTGTCGAAAGAACAGTACTCAGAGTCTCCCGCCAGACATTTGGAAGTTGCCAGTTTTTTCTGAAGTTAAGTGTTGGTAGAGAACCACTCTATGGACACATCATGAAGTGTGAACCAGGCTTTAGGTATCAGAATCCAGCTGCGAGTCAAAAGTCACTGGATTCTGGCCAATTGGAGGGTTAATCATCAtcgtcatcctcctcctcttcgtcttcatcctcatcctcctcctcctcctcttcgtcTTCATCCTCATCCTCTTCGTCCTCATCCTCTTCGTCCTCATCGTCCTCCTCCTCGTCGTCATCCTCCGTGTTCACTTTCCCTGACAGCACGTCCTCAATCCAGTCCTCCAGCTCCTGTGCGCTGGGCAGATCCTCATCATCTGCCAGGTCCATCCACACGCTGTCAGCATCAGTAACATTCACCACTCCAATCTGAGGCTTGAAGAGGTCGATTTTGAAGGTTTTCTCCCAGTATGTAATCAGCAGTGGAAAGTCATCTGGGTCAATCCACACAATGCTCAGTTCTGGGTTGTTGGTGTTCTCCCTGGCCACTTCTTTCAGGATCTCAAGGAACTCAAAGCCATCAGGATCCTCTGCCTCTGCAAAAGCCACAATATGAATTCCATCCATGTCGTCTTCCCATGTCTCAAACATGTCTTCTGCACGTAGCTTTCTCAGGGTAGGTCTTTTGTGTTCATTTACAAACTCCACAATCTCCTCTTCTGTGTATGGCTTTCCAGGAATGGTCACGGGTTCCTCCATGAAAGGTTCATAGAAGTCCACCTCGTTCATTTTCAAAGTAAGTTGTTTTGCCACGACTTTATCAAAAGTGGCAAAGAACTTAATAAATGGCTGAAAATTTTCTGCTGCCTCTTGAAACGCCTTGAAGTGCTCAGAGTCTTCTCCTTTGAAAAACCCAATGAGCTTGATGGCCTCATCAATACTGTCGAAGGCCCTGAGTTCCATGGAGTTGCTAATGAGCTCCACAGGGTCTTCCAACAGATCCAAAAGGAACTCAACAAGAGTGTCTGCAGAGAGCTCCCCATCGAACTCGATCACCCGTTCGTCTTTGAACACGTAAATACTGCCTTCTTCTTCCAGGCCAAGTTTCTTAGCCACTTTGGCATCTTTCTTGGAATCTACCATTCCAAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90976 lncRNA upstream 130210 31143423 ~ 31147877 (+) True AMCG00014786
TU90969 lncRNA upstream 274299 31003372 ~ 31003788 (+) True G72789
TU90963 lncRNA upstream 321803 30955905 ~ 30956284 (+) True G72783
TU90941 lncRNA upstream 431666 30846162 ~ 30846421 (+) True G72769
TU90940 lncRNA upstream 433417 30841560 ~ 30844670 (+) True G72768
TU91052 lncRNA downstream 174712 31462146 ~ 31463811 (+) True G72861
TU91067 lncRNA downstream 232912 31520346 ~ 31523187 (+) True AMCG00014793
TU91076 lncRNA downstream 236881 31524315 ~ 31592105 (+) True G72875
TU91126 lncRNA downstream 414728 31702162 ~ 31702435 (+) True G72911
TU91127 lncRNA downstream 415712 31703146 ~ 31703573 (+) True G72912
AMCG00014787 mRNA upstream 13832 31241301 ~ 31264255 (+) True AMCG00014787
AMCG00014786 mRNA upstream 131950 31145769 ~ 31146137 (+) False AMCG00014786
AMCG00014783 mRNA upstream 233346 31041891 ~ 31044741 (+) True AMCG00014783
AMCG00014784 mRNA upstream 251085 31023543 ~ 31027002 (+) True AMCG00014784
AMCG00014781 mRNA upstream 360521 30907169 ~ 30917566 (+) True AMCG00014781
AMCG00014788 mRNA downstream 10316 31297750 ~ 31308262 (+) True AMCG00014788
AMCG00014792 mRNA downstream 25539 31312973 ~ 31330675 (+) True AMCG00014792
AMCG00014793 mRNA downstream 225374 31512808 ~ 31520404 (+) False AMCG00014793
AMCG00014800 mRNA downstream 394097 31681531 ~ 31696173 (+) True AMCG00014800
AMCG00014801 mRNA downstream 419814 31707248 ~ 31709519 (+) True AMCG00014801
TU90967 other upstream 281724 30990063 ~ 30996363 (+) True G72787
TU90966 other upstream 297835 30979570 ~ 30980252 (+) True G72786
TU90965 other upstream 299262 30978216 ~ 30978825 (+) True G72785
TU90928 other upstream 472346 30764351 ~ 30805741 (+) False AMCG00014777
TU90740 other upstream 1426266 29851450 ~ 29851821 (+) True G72605
TU91144 other downstream 429684 31717118 ~ 31754930 (+) True G72925
TU91344 other downstream 1255076 32542510 ~ 32561489 (+) True G73103
TU91511 other downstream 2077321 33364755 ~ 33366100 (+) True G73244
TU91569 other downstream 2951500 34238934 ~ 34239400 (+) True G73292
TU91608 other downstream 3492688 34780122 ~ 34780590 (+) True G73329

Expression Profile