RNA id: TU91052


Basic Information

Item Value
RNA id TU91052
length 1666
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G72861
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 31462146 ~ 31463811 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctcatattttatttttgacatttatttataatgtgacAAAccttagaaaaaataaaactacaatgtATCCATagtcaaaaaggaaaataaaatttcaaaactttattttttacaaaattctCAGTGCCTTCTGATACTATTTTAACACACATAAATGGTCTTCTTTCCTTATTGCCATTCCAATACAAATGatgcatgttttatgtataatgCAACAAAGGAATAATGTTAGCTAGATGtcagatatttgtatttaattgaacccaAACTCTATCTAGTATTTAATTCCATACCATGTTGTTCATCTTTGGTGTCATATATGTAGAATCTGAACTCACAAACAACTAGAATTTAGtgagattaaacaaaaagatatatttgtttttcttcaattggAAATAGATAGCCACCTGGCTTACAAAATAAGTAGCAGAAGGATTTTCAATAAAGACAGCAAAAGTAAAAAACACTAAAAGAGATTGCCAAGTAATTCTGCCAGTACAATTAGCAAATTAAGTGTAAAGTTGGtatttttcacagtttgttcTTACACAGACATCTCTGTTCAGGATTAGGTAGGATTGGTTTATTGCCAACTGACATCTAACCACACATTGCaaaatttctttttttgtgctgtATCGGGTCTCGGTctaaaaactatttgtttttattgaacaaCTAATACTATAGAACAGATACAGGTCTCAGAATTAGTCATTCTGAATTCACAAAACTACTGCAGCAGTGCACTGTACACAGCAACCCAAGACTGAGAATTAggtaaaagctttttcttttctttttttttctcattacactttaaaacacaGCTGGTAAGCAGAGAGATTACAAATATCTACACATATgtccagaaaaaaaatctttaaaatcaaCAATAAGCAGAACATCATAAAATAGAGGAAATTAAACCATGTGGTGTACAATCTACTCTTCTGCACCTTCAGTCCAAATTTAGATGACTTTGAGGGACTCGGAATGTGTACcatctgatttgtatttaattaaaccccactgaagaagaaaaacacttgtCATAACCCCCAGGTAAACATACCTGAAACACATGAGCAGATACATTACAAGGGAGCAGAACAGAAAGAACTTGCAGGTATCAACCTACTGTTTTTCTCCAATTGGGGTTTGGAGGagtaaaacagacacaaacaatgGATTCAGATTTCTTTGGGCACAGAACATTCTGTATTCTGAGAAAGCTTCAATGTTTAAGGTCTATACTGAGAGCAAACCAACTGGAATTACAGAAGGAATtcacaatacaaacatattGAATTGAAGGACATATAGTATAGCAGTGGTACACAGATAACTGATCATGACattctgtataggaaagttttttttattatcagcaGCCACATCATTGCCTTCCATGATTATCAtggatatatattgttttgatgcACGTACACTAGTAGTCATATCAGTTGCTGGTGTGCCACAGTGAACTTTTTATTCCAGCTggagctttcaattacttaattaacccTGTTAAACCTTAATTAAACCTGTTGATTTTAAGTATTCAACACACATAACATGATGTTAAAGACCTTTACTCTTCATAGCTTAGCTGACATAATTTGcagcatgcatatatatatatatatatatatatatatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90999 lncRNA upstream 174712 31278087 ~ 31287434 (+) True G72815
TU90997 lncRNA upstream 179288 31278087 ~ 31282858 (+) False G72815
TU90976 lncRNA upstream 314269 31143423 ~ 31147877 (+) True AMCG00014786
TU90969 lncRNA upstream 458358 31003372 ~ 31003788 (+) True G72789
TU90963 lncRNA upstream 505862 30955905 ~ 30956284 (+) True G72783
TU91067 lncRNA downstream 56535 31520346 ~ 31523187 (+) True AMCG00014793
TU91076 lncRNA downstream 60504 31524315 ~ 31592105 (+) True G72875
TU91126 lncRNA downstream 238351 31702162 ~ 31702435 (+) True G72911
TU91127 lncRNA downstream 239335 31703146 ~ 31703573 (+) True G72912
TU91145 lncRNA downstream 281712 31745523 ~ 31746900 (+) True G72926
AMCG00014792 mRNA upstream 131471 31312973 ~ 31330675 (+) True AMCG00014792
AMCG00014788 mRNA upstream 153884 31297750 ~ 31308262 (+) True AMCG00014788
AMCG00014787 mRNA upstream 197891 31241301 ~ 31264255 (+) True AMCG00014787
AMCG00014786 mRNA upstream 316009 31145769 ~ 31146137 (+) False AMCG00014786
AMCG00014783 mRNA upstream 417405 31041891 ~ 31044741 (+) True AMCG00014783
AMCG00014793 mRNA downstream 48997 31512808 ~ 31520404 (+) False AMCG00014793
AMCG00014800 mRNA downstream 217720 31681531 ~ 31696173 (+) True AMCG00014800
AMCG00014801 mRNA downstream 243437 31707248 ~ 31709519 (+) True AMCG00014801
AMCG00014798 mRNA downstream 263475 31727286 ~ 31741350 (+) True AMCG00014798
AMCG00014804 mRNA downstream 289465 31753276 ~ 31763835 (+) True AMCG00014804
TU90967 other upstream 465783 30990063 ~ 30996363 (+) True G72787
TU90966 other upstream 481894 30979570 ~ 30980252 (+) True G72786
TU90965 other upstream 483321 30978216 ~ 30978825 (+) True G72785
TU90928 other upstream 656405 30764351 ~ 30805741 (+) False AMCG00014777
TU90740 other upstream 1610325 29851450 ~ 29851821 (+) True G72605
TU91144 other downstream 253307 31717118 ~ 31754930 (+) True G72925
TU91344 other downstream 1078699 32542510 ~ 32561489 (+) True G73103
TU91511 other downstream 1900944 33364755 ~ 33366100 (+) True G73244
TU91569 other downstream 2775123 34238934 ~ 34239400 (+) True G73292
TU91608 other downstream 3316311 34780122 ~ 34780590 (+) True G73329

Expression Profile