RNA id: TU91304


Basic Information

Item Value
RNA id TU91304
length 257
lncRNA type inter_gene
GC content 0.54
exon number 3
gene id G73066
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 32357702 ~ 32362393 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGAGCGACTTGCGAGTTTAGCGAGCGGGCAGAGTGAACGTAGGGTTACACAACACCAGCCCCGACCAGGCAAATGGATATGATCAGCACTCCAATAACACAAGTAAGTCGGTTCGAACTCCTCATCCTCTCTCGCAGCCTGACAGCAAACCGCTGACCAGGCGGACAGCCGCAGACTGGAAATGGAAGACCTCAGATATAGCTGAACGTGGCGAATACCAGGGGAGAGGGGATACACCAAGTTCCAAATAAAGCGG

Function

GO:

id name namespace
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003010 voluntary skeletal muscle contraction biological_process
GO:0031444 slow-twitch skeletal muscle fiber contraction biological_process
GO:0014721 twitch skeletal muscle contraction biological_process
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function
GO:0015081 sodium ion transmembrane transporter activity molecular_function

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05414 Dilated cardiomyopathy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91285 lncRNA downstream 92278 32265132 ~ 32265424 (-) True G73049
TU91282 lncRNA downstream 100927 32256155 ~ 32256775 (-) True G73046
TU91232 lncRNA downstream 458757 31896940 ~ 31898945 (-) True G73005
TU91136 lncRNA downstream 659690 31697655 ~ 31698012 (-) True G72919
TU91074 lncRNA downstream 837770 31515430 ~ 31519932 (-) False G72874
TU91322 lncRNA upstream 68204 32430597 ~ 32430951 (-) True G73082
TU91351 lncRNA upstream 88029 32450422 ~ 32466416 (-) True G73106
TU91353 lncRNA upstream 92913 32455306 ~ 32555945 (-) False AMCG00014816
TU91358 lncRNA upstream 160845 32523238 ~ 32523802 (-) True G73112
TU91363 lncRNA upstream 207278 32569671 ~ 32574686 (-) True G73117
AMCG00014814 mRNA downstream 34943 32321974 ~ 32322759 (-) True AMCG00014814
AMCG00014813 mRNA downstream 71766 32270685 ~ 32285936 (-) True AMCG00014813
AMCG00014809 mRNA downstream 388479 31967444 ~ 31969223 (-) True AMCG00014809
AMCG00014806 mRNA downstream 567965 31769573 ~ 31789737 (-) True AMCG00014806
AMCG00014797 mRNA downstream 650180 31700627 ~ 31707522 (-) True AMCG00014797
AMCG00014816 mRNA upstream 139924 32502317 ~ 32555533 (-) True AMCG00014816
AMCG00014820 mRNA upstream 266439 32628832 ~ 32641932 (-) True AMCG00014820
AMCG00014819 mRNA upstream 285141 32647534 ~ 32648995 (-) True AMCG00014819
AMCG00014818 mRNA upstream 287783 32650176 ~ 32653420 (-) True AMCG00014818
AMCG00014823 mRNA upstream 429488 32791881 ~ 32793425 (-) True AMCG00014823
TU91283 other downstream 94275 32263167 ~ 32263427 (-) True G73047
TU90581 other downstream 2959397 29389290 ~ 29398305 (-) True G72477
TU90285 other downstream 4025220 28329739 ~ 28332482 (-) True G72236
TU87063 other downstream 20695209 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 21559555 10796716 ~ 10798147 (-) True G69537
TU91373 other upstream 235069 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 235069 32597462 ~ 32619149 (-) False G73127
TU91480 other upstream 439465 32801858 ~ 32806295 (-) True AMCG00014824
TU91607 other upstream 2407190 34769583 ~ 34769979 (-) True G73328
TU91914 other upstream 3218233 35580626 ~ 35608677 (-) True AMCG00014839

Expression Profile