RNA id: TU91410



Basic Information


Item Value
RNA id TU91410
length 1080
lncRNA type inter_gene
GC content 0.34
exon number 4
gene id G73158
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 32672511 ~ 32681805 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AATTCGAGTGACACAGAATTCATCGTAATAGCTGCTGTGCACTAACGAGATCAGATATGCCTATTGTATCATGATTGGCATTGTACGAAGATCAGGCTGAAGTGaactaattttgttttctgattataAACCTTGGTCTCGGGACTCTTAATAATGTATACTGACTGGCTCTTACACTGGTGTAATGACAGTAAAGATATCTCAAGGAAAATAACTtggaatatatttaatcttGCTTTCTGTTCATTTCTGCTTTTCCTCCCCCATCAAATATCAGTCCTGTACAGGTTAACTACAACCAGGCTCATAGCAAAACCCACAAAACTGTGGAGAGATGCATTGGAGTTTGGAAGAGGTGTTTTCACAACTTGCATGGAGAAATCAGAATGGCTCCGGATAGCAATTATTTTGCAACCGCAGGACTACACAATTTTGCAagacTTCAAAATCTTCGAGACCCTACAGATACCTTTCTTCCTGACGACTCTGTACCACAAGATTTAGCATGTAATGATGAAATGGAGAGTGCTGGGAGTTCAACAAGGACTGTGCTTACTAATAACTATCCttgaaataattcagaaataacagtaatggaaattggactacttatataatgaaatgtttaatttcattaataaaaactTACAAACATATCTATTATCTAGTATCtattataaagaatgacaaatgtattcacaaccTTAATAATTACAACTAATTACAACCAAATCAACAAATcttaataattacaacaatacTCTTCCCCTTTGAACTCTAATTTTCGAATCTTgccatttttaactttatcattttgatttctagatcaagGTTTTCCCTTTCCAACAATAGATTTCCCTTCTTGAGTTCCAACTCTTTAACGTGAAGGTCCTCTCTTTGAAtcctattttttatatttttagtctGAATGGGGCTGACATCTTcagaatctgcaattaaatcaGTTAATTACTTTTTGTTATGTAGTAGTTATGTAGCTGTATAAGCAATAATTGTAAATTTTCAATAGCCctatgttaaaatgtgtatttgcattAAACAGCACTCGTGTGTAATACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU91366 lncRNA upstream 96632 32575447 ~ 32575879 (+) True G73120
TU91345 lncRNA upstream 105615 32565793 ~ 32566896 (+) True G73104
TU91348 lncRNA upstream 108172 32558281 ~ 32564339 (+) True G73105
TU91281 lncRNA upstream 415735 32256009 ~ 32256776 (+) True G73045
TU91254 lncRNA upstream 676973 31971985 ~ 31995538 (+) True G73019
TU91472 lncRNA downstream 122863 32804668 ~ 32806309 (+) True G73212
TU91485 lncRNA downstream 388198 33070003 ~ 33070214 (+) True G73220
TU91514 lncRNA downstream 773806 33455611 ~ 33456414 (+) True G73247
TU91515 lncRNA downstream 773806 33455611 ~ 33645483 (+) False G73247
TU91527 lncRNA downstream 964119 33645924 ~ 33653699 (+) False G73257
AMCG00014817 mRNA upstream 9357 32653743 ~ 32663154 (+) True AMCG00014817
AMCG00014815 mRNA upstream 275003 32396687 ~ 32397508 (+) True AMCG00014815
AMCG00014812 mRNA upstream 417220 32242954 ~ 32255291 (+) True AMCG00014812
AMCG00014810 mRNA upstream 658120 32013184 ~ 32014391 (+) True AMCG00014810
AMCG00014811 mRNA upstream 709540 31939553 ~ 31962971 (+) False AMCG00014811
AMCG00014821 mRNA downstream 53063 32734868 ~ 32756137 (+) True AMCG00014821
AMCG00014822 mRNA downstream 77160 32758965 ~ 32768979 (+) True AMCG00014822
AMCG00014827 mRNA downstream 1015718 33697523 ~ 33778248 (+) True AMCG00014827
AMCG00014831 mRNA downstream 2009280 34691085 ~ 34931860 (+) True AMCG00014831
AMCG00014833 mRNA downstream 2346052 35027857 ~ 35320982 (+) True AMCG00014833
TU91344 other upstream 111022 32542510 ~ 32561489 (+) True G73103
TU91144 other upstream 917581 31717118 ~ 31754930 (+) True G72925
TU90967 other upstream 1676148 30990063 ~ 30996363 (+) True G72787
TU90966 other upstream 1692259 30979570 ~ 30980252 (+) True G72786
TU90965 other upstream 1693686 30978216 ~ 30978825 (+) True G72785
TU91511 other downstream 682950 33364755 ~ 33366100 (+) True G73244
TU91569 other downstream 1557129 34238934 ~ 34239400 (+) True G73292
TU91608 other downstream 2098317 34780122 ~ 34780590 (+) True G73329
TU91622 other downstream 2260206 34942011 ~ 34960447 (+) True G73343
TU91690 other downstream 2708829 35390634 ~ 35394649 (+) False AMCG00014836

Expression Profile