RNA id: TU91511


Basic Information

Item Value
RNA id TU91511
length 1346
RNA type TUCP
GC content 0.60
exon number 1
gene id G73244
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 33364755 ~ 33366100 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGACGAGACGGGGAGGTGccggttgacagagctgcagagtcctgggtccttggagCGGTCCGGAGGCCGAGGCGAGTGGAGATTGGGACGGACCGGGAGCGACAGgggacctagccagaggagtcGGCGGACTCCTCACGGAGTGGGTCCCATCCAGAAGCCCGGCCGACCATCTACCCGGAGCCCGGCCTGACCAGGACTGCTCCCTGCTGACGTCaccagccaggatccaggagaggcctcgGATAGCAGGGACCGACCAGGCCGATCGGCAACGtccctgagggaggcctcctgcagccagggcccGGACTTCTCCCCACAAGGCCCGCTCCCTGCAAGAGCCCCGGAGGTGGAAGCTGCTCCCCAGCCAGGTGGACTTGCCCCGACCTCCGGAttgagagcctctggacccttCTCCCAGGTAGGAAAGCGCAGCATGGCCCAGCGAACCGCCGGTGTGAGGTGCCATAATGCGGTGTGATTCAGCCGTGAGGCTGGAGCCGAGACCGCGGCCCTCACCCGGCTGGAGTTCAGCAGGTCCGTGCTGCAGAGGGGCCTGGGCTTTGCCCCTTCTGAGCTGAACTGCGTGGTTAAACTGCCTGGACCTAGGGAcgtgtttgaggtgagttttaagaaccCTCAAGTGCTGGAGAGTTTTTGGAATCtatatagagaaaaaaaagatagcATGCCCCTGAGTGACTTTGTGGTCGATGCCCTGACTGATAGAGAGATTAAAATAGTAACTATCCAGTTCTATAATGAAGCAGTGGCAGAGTATGATGTAGAGGTATGGCTGAGGAGACACTGCGAGATCCTGTCTGAAAGCAGGAGAGTTAATGATGAGGACAGGGTCTGGACCGGTGCTCGGCGGTGGCAGGTACGCCTGCAGGTGAAAGTGGCCGCCATCGGCGGAGTACGCCATCTGCCGAGCACCGTGGTATTAGGAGCAAATAGGGGGCTTGTCTTCTACCATGGCATGCCCAAATTATGCAGGAACTGCGGGGCCCTGGGTCATTTAGCCGCAGCCTGCACTGTTGTTAAGTGCAAGGTCTGCGGCGGAGAACATCTGACCAGGGCCTGCAAGCAGGAGAGGGCCTGCAACCTGTGCGGTGGGGGAGGGCATCTCTTCAGGAATTGTCCCTCCTCCTATGCAAATAGGGCGCGGGCCCTCGGgggtggtggagagagagagaatcaagTGGAGGCTCCTCCAAAGGTGATACCCCAAGATGGGGGTAGAGAGGAAACAGTCCTAAGGAGCCTCATAGGCTCCCTCTCTGACTCTAGGTCAGAagtggaggcagagggggagtgGACAGTGGTAGCGGGGAAGAGGAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91485 lncRNA upstream 294541 33070003 ~ 33070214 (+) True G73220
TU91472 lncRNA upstream 558446 32804668 ~ 32806309 (+) True G73212
TU91410 lncRNA upstream 682950 32672511 ~ 32681805 (+) True G73158
TU91366 lncRNA upstream 788876 32575447 ~ 32575879 (+) True G73120
TU91345 lncRNA upstream 797859 32565793 ~ 32566896 (+) True G73104
TU91514 lncRNA downstream 89511 33455611 ~ 33456414 (+) True G73247
TU91515 lncRNA downstream 89511 33455611 ~ 33645483 (+) False G73247
TU91527 lncRNA downstream 279824 33645924 ~ 33653699 (+) False G73257
TU91529 lncRNA downstream 279824 33645924 ~ 33725262 (+) True G73257
TU91534 lncRNA downstream 413123 33779223 ~ 33779473 (+) True G73261
AMCG00014822 mRNA upstream 595776 32758965 ~ 32768979 (+) True AMCG00014822
AMCG00014821 mRNA upstream 608618 32734868 ~ 32756137 (+) True AMCG00014821
AMCG00014817 mRNA upstream 701601 32653743 ~ 32663154 (+) True AMCG00014817
AMCG00014815 mRNA upstream 967247 32396687 ~ 32397508 (+) True AMCG00014815
AMCG00014812 mRNA upstream 1109464 32242954 ~ 32255291 (+) True AMCG00014812
AMCG00014827 mRNA downstream 331423 33697523 ~ 33778248 (+) True AMCG00014827
AMCG00014831 mRNA downstream 1324985 34691085 ~ 34931860 (+) True AMCG00014831
AMCG00014833 mRNA downstream 1661757 35027857 ~ 35320982 (+) True AMCG00014833
AMCG00014835 mRNA downstream 2004884 35370984 ~ 35382903 (+) True AMCG00014835
AMCG00014836 mRNA downstream 2028210 35394310 ~ 35412072 (+) False AMCG00014836
TU91344 other upstream 803266 32542510 ~ 32561489 (+) True G73103
TU91144 other upstream 1609825 31717118 ~ 31754930 (+) True G72925
TU90967 other upstream 2368392 30990063 ~ 30996363 (+) True G72787
TU90966 other upstream 2384503 30979570 ~ 30980252 (+) True G72786
TU90965 other upstream 2385930 30978216 ~ 30978825 (+) True G72785
TU91569 other downstream 872834 34238934 ~ 34239400 (+) True G73292
TU91608 other downstream 1414022 34780122 ~ 34780590 (+) True G73329
TU91622 other downstream 1575911 34942011 ~ 34960447 (+) True G73343
TU91690 other downstream 2024534 35390634 ~ 35394649 (+) False AMCG00014836
TU92227 other downstream 4152008 37518108 ~ 37518406 (+) True G73850

Expression Profile