RNA id: TU91674


Basic Information

Item Value
RNA id TU91674
length 1108
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G73385
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 35273610 ~ 35274738 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNacctacacaatattaggcaggtggtcataatgttatggctgattggtatatataattttaaaactgaGGTGAATAAGTCCAAATTGACTACACTCAAAGTCACCTTTGTAAATGTGGGCATTGAAGTATAATCTGCTGCAGTATTTTCAACTGCCAATCAAAAACTAGATGGGATGTGTGCTTCTCTAGATTGCAATATTCCAGTTGACAGTGTCACAGAAAAGACAGCTACTTTACTAATTTTAGGTTTAGTGCAGTGTTTCACTGATAATGCTGAGGATTATGACATGTTTCAGGTGTTCTGCTGGTTTGGAAAAGTGGTATCAAAGGGCAGGTATGTTCCAATGTGTGTGGATGATATACTGTAGCTCAGAATTaagaaattagatttttttttttttaatggtgaaAATGGTGGTTCAACGTGTCAAATATCCATGATatgcttcctcctcctcctcctcctctgattGTGAGCAATCAGTCTGACCATGGCCCTCCATGGCCTCTGTATTAGACTGCTCTGTGCCACAGTCTCCAGGCTCCAGAGTCTCAGACACAGGGCACTTGGAAAGCACCTGTTCTTGAAGCTCCTCCTCTGGATGCTGCTCGTCTTGATCCAGGGTCACCCCACCTGAAAGGTTTCCCAAGAATGCCTGTAGCCCCTCCACTTTCACGGAGAGCAGGTTGACGTCATCAGATTCCAGGCTAGACTCCTTCCTTTTAGGTATCGACTCCTGAGGCTCAGTATCAGACTGGACCCAAGACCCTGCAGTCTTCACACACATAAGCATGTGTAGTTGCTGCACTGGCTTTCCCACACTAGTGGCTTGTCCAGACTCATCAGTTGTGACACATGGGGCTGAACCTGAAGAAATATAGGGTTTGGTGGATGCACTTGCTGCAGAAATACGCAGACCTAGGTGTTCATAGCCATCCTTTCCCTCTTCATCTGCATCCTCAATGTCACTGGAATTCCAAGTGCCCAGACCATCCTCTTTCTGCCATCCTCCAGGTTTCTGGATGAAAGTAACAGATTCTATATACTGTCTGCAGTCTTCTGGTGTAAAGTTCAGGAAGTTGAGGGAGGGTTTAAACACAACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91668 lncRNA downstream 5493 35267752 ~ 35268117 (-) True G73381
TU91665 lncRNA downstream 14667 35257466 ~ 35258943 (-) True G73378
TU91659 lncRNA downstream 20876 35251894 ~ 35252734 (-) True G73373
TU91652 lncRNA downstream 39495 35233720 ~ 35234115 (-) True G73366
TU91651 lncRNA downstream 49750 35223528 ~ 35223860 (-) True G73365
TU91844 lncRNA upstream 998 35275736 ~ 35360377 (-) True G73533
TU91845 lncRNA upstream 998 35275736 ~ 35360377 (-) False G73533
TU91864 lncRNA upstream 65935 35340673 ~ 35423135 (-) True G73548
TU91882 lncRNA upstream 116446 35391184 ~ 35464665 (-) True G73562
TU91890 lncRNA upstream 160231 35434969 ~ 35842991 (-) True G73568
AMCG00014832 mRNA downstream 92971 35172869 ~ 35180639 (-) True AMCG00014832
AMCG00014830 mRNA downstream 313361 34942975 ~ 34960249 (-) True AMCG00014830
AMCG00014829 mRNA downstream 341964 34910593 ~ 34931646 (-) True AMCG00014829
AMCG00014828 mRNA downstream 708408 34564486 ~ 34565202 (-) True AMCG00014828
AMCG00014826 mRNA downstream 1839228 33127678 ~ 33434382 (-) True AMCG00014826
AMCG00014839 mRNA upstream 306977 35581715 ~ 35592456 (-) False AMCG00014839
AMCG00014838 mRNA upstream 360249 35634987 ~ 35688097 (-) True AMCG00014838
AMCG00014841 mRNA upstream 467796 35742534 ~ 35767390 (-) True AMCG00014841
AMCG00014842 mRNA upstream 517610 35792348 ~ 35814438 (-) True AMCG00014842
AMCG00014840 mRNA upstream 703468 35978206 ~ 35986568 (-) True AMCG00014840
TU91607 other downstream 503631 34769583 ~ 34769979 (-) True G73328
TU91480 other downstream 2467315 32801858 ~ 32806295 (-) True AMCG00014824
TU91374 other downstream 2654461 32597462 ~ 32619149 (-) False G73127
TU91373 other downstream 2658804 32597462 ~ 32614806 (-) True G73127
TU91283 other downstream 3010183 32263167 ~ 32263427 (-) True G73047
TU91914 other upstream 305888 35580626 ~ 35608677 (-) True AMCG00014839
TU91940 other upstream 826620 36101358 ~ 36182351 (-) True G73604
TU91951 other upstream 979036 36253774 ~ 36254187 (-) True G73612
TU92007 other upstream 1098413 36373151 ~ 36393493 (-) True AMCG00014845
TU92209 other upstream 2050282 37325020 ~ 37325307 (-) True G73833

Expression Profile