RNA id: TU92228


Basic Information

Item Value
RNA id TU92228
length 289
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G73851
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 37518043 ~ 37518331 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

acagctgaactgtactgcacaaGCAACACCCTCAACCTGTTTATTTGCAAGGGCAGCAACACAGATCATTGCTATTTTGTCTAGCACAGTGTAGAAATTGGACTTGGTCATGATAGGGATGGTGTTTCCAAAAGAACTCTGGAGAACTTTTTGAACAGCTGTAAAAGCAGGTACACCAGGCCATGGATCtttatacagcattctcttgAGCATGTTGGGGAGGGCATccactgttttcacaatatCCTCAACTAGCAATGTCACATTAGGATTACCAGtatcatacaaa

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0017001 antibiotic catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92178 lncRNA downstream 344872 37172930 ~ 37173171 (-) True G73803
TU92141 lncRNA downstream 501870 37015950 ~ 37016173 (-) True G73776
TU92083 lncRNA downstream 787482 36689357 ~ 36730561 (-) True G73722
TU92063 lncRNA downstream 866000 36646059 ~ 36652043 (-) True G73704
TU92025 lncRNA downstream 1042095 36474243 ~ 36475948 (-) True G73667
TU92230 lncRNA upstream 13139 37531470 ~ 37531976 (-) True G73853
TU92234 lncRNA upstream 55407 37573738 ~ 37574140 (-) True G73857
TU92243 lncRNA upstream 63435 37581766 ~ 37582162 (-) True G73866
TU92288 lncRNA upstream 164908 37683239 ~ 37683542 (-) True G73908
TU92291 lncRNA upstream 185515 37703846 ~ 37704048 (-) True G73911
AMCG00014859 mRNA downstream 96876 37417533 ~ 37421167 (-) True AMCG00014859
AMCG00014857 mRNA downstream 158334 37323742 ~ 37359709 (-) True AMCG00014857
AMCG00014858 mRNA downstream 208226 37302224 ~ 37309817 (-) True AMCG00014858
AMCG00014854 mRNA downstream 402377 37080157 ~ 37115666 (-) True AMCG00014854
AMCG00014856 mRNA downstream 444275 37068871 ~ 37073768 (-) True AMCG00014856
AMCG00014861 mRNA upstream 36558 37554889 ~ 37558209 (-) True AMCG00014861
AMCG00014860 mRNA upstream 84141 37602472 ~ 37616362 (-) True AMCG00014860
AMCG00014865 mRNA upstream 283763 37802094 ~ 37864483 (-) True AMCG00014865
AMCG00014866 mRNA upstream 353075 37871406 ~ 37887963 (-) True AMCG00014866
AMCG00014871 mRNA upstream 426816 37945147 ~ 37954312 (-) True AMCG00014871
TU92209 other downstream 192736 37325020 ~ 37325307 (-) True G73833
TU92007 other downstream 1124550 36373151 ~ 36393493 (-) True AMCG00014845
TU91951 other downstream 1263856 36253774 ~ 36254187 (-) True G73612
TU91940 other downstream 1335692 36101358 ~ 36182351 (-) True G73604
TU91914 other downstream 1909366 35580626 ~ 35608677 (-) True AMCG00014839
TU92296 other upstream 261002 37779333 ~ 37783575 (-) True G73916
TU92499 other upstream 824991 38343322 ~ 38350291 (-) False G74087
TU92533 other upstream 893829 38412160 ~ 38413231 (-) True G74107
TU92542 other upstream 913932 38432263 ~ 38432875 (-) True G74115
TU92559 other upstream 971992 38490323 ~ 38490940 (-) False AMCG00014891

Expression Profile