RNA id: TU92296


Basic Information

Item Value
RNA id TU92296
length 830
RNA type TUCP
GC content 0.51
exon number 3
gene id G73916
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 37779333 ~ 37783575 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTAGCCAAATGCCTCGTCATCTAATTAGTGACGCACATGAATGGATGAACGAGATTCCCACCATCCCTACCTACAATCTAGCGAAACCACAGCCAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCTGGCACTGACAAACGGTAACGCAGGTGTCCTAAGGTGGACAGAAACCTCCTGTGGAGCAGAAGGGCAAAAGCTTGCTTGATCTTGATTGTCAGTATGAATACAGACCGTGAAAGCGGGGCCTCACGATCCTTCTGACTTTTTGGGTTTTAAGCAGGATGTGTCAGAAAAGTTACCACAGGAATAACTGGCTTGTGGCAGCCAAGCGTTCATAGCGATGTCGCTTTTTGATCCTTCGATGTTCGCTCTTTCTATCATTGTGAAGCAGAATTCACCAAGCGTTGGATTGTTCACCCACTAATAGGGAACGTGAGCTGGGTTTAGACCGTCATGAGACAGGTTAGTTTTACCCTACTGATGATGTGTTGTTGCAATAGTAATCCTGCTCAGTATGAGAGGAAACGCAGGTTAAGACATTTGGTGTATGTCAGAATCCCCCCTAAACGTAGCGATACTCTAGCGCCGTGGGTCTCCGGTTGGCCTTCGGGCCGGTGCGGAGCGCCGTTCATGTCAGGGCTGGGGAGCGGACAGACGAGAGGCCGCCCTTCTCCTGAGACGCACCGCATGTTCTTGGGGAACCTGGTGCTAAATCATTCGCAGACAACCTGGTTCTGGGTCAGGGTGTTGTACGTAGCAGAGCAGCCACCCTCGCTGCGATCTATTGAAAGTCAGCCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92291 lncRNA downstream 75285 37703846 ~ 37704048 (-) True G73911
TU92288 lncRNA downstream 95791 37683239 ~ 37683542 (-) True G73908
TU92243 lncRNA downstream 197171 37581766 ~ 37582162 (-) True G73866
TU92234 lncRNA downstream 205193 37573738 ~ 37574140 (-) True G73857
TU92230 lncRNA downstream 247357 37531470 ~ 37531976 (-) True G73853
TU92299 lncRNA upstream 42904 37826479 ~ 37826702 (-) True G73918
TU92314 lncRNA upstream 59595 37843170 ~ 37844343 (-) False AMCG00014865
TU92368 lncRNA upstream 279772 38063347 ~ 38071617 (-) True G73980
TU92433 lncRNA upstream 394399 38177974 ~ 38180598 (-) True G74030
TU92434 lncRNA upstream 396472 38180047 ~ 38180598 (-) False G74030
AMCG00014860 mRNA downstream 162971 37602472 ~ 37616362 (-) True AMCG00014860
AMCG00014861 mRNA downstream 221124 37554889 ~ 37558209 (-) True AMCG00014861
AMCG00014859 mRNA downstream 358166 37417533 ~ 37421167 (-) True AMCG00014859
AMCG00014857 mRNA downstream 419624 37323742 ~ 37359709 (-) True AMCG00014857
AMCG00014858 mRNA downstream 469516 37302224 ~ 37309817 (-) True AMCG00014858
AMCG00014865 mRNA upstream 18519 37802094 ~ 37864483 (-) True AMCG00014865
AMCG00014866 mRNA upstream 87831 37871406 ~ 37887963 (-) True AMCG00014866
AMCG00014871 mRNA upstream 161572 37945147 ~ 37954312 (-) True AMCG00014871
AMCG00014875 mRNA upstream 253788 38037363 ~ 38040051 (-) True AMCG00014875
AMCG00014874 mRNA upstream 263911 38047486 ~ 38052112 (-) True AMCG00014874
TU92209 other downstream 454026 37325020 ~ 37325307 (-) True G73833
TU92007 other downstream 1385840 36373151 ~ 36393493 (-) True AMCG00014845
TU91951 other downstream 1525146 36253774 ~ 36254187 (-) True G73612
TU91940 other downstream 1596982 36101358 ~ 36182351 (-) True G73604
TU91914 other downstream 2170656 35580626 ~ 35608677 (-) True AMCG00014839
TU92499 other upstream 559747 38343322 ~ 38350291 (-) False G74087
TU92533 other upstream 628585 38412160 ~ 38413231 (-) True G74107
TU92542 other upstream 648688 38432263 ~ 38432875 (-) True G74115
TU92559 other upstream 706748 38490323 ~ 38490940 (-) False AMCG00014891
TU92596 other upstream 813793 38597368 ~ 38644538 (-) False G74160

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00036438 True 890 lncRNA 0.58 1 NC_007131.7 55169000 ~ 55169889 (+)
striped catfish (Pangasianodon hypophthalmus) TU490303 False 1165 lncRNA 0.54 4 NW_022995282.1 82354 ~ 213098 (-)
tiger barb (Puntius tetrazona) TU286324 False 850 lncRNA 0.55 2 NW_025048726.1 47934 ~ 74864 (-)