RNA id: TU92655


Basic Information

Item Value
RNA id TU92655
length 821
lncRNA type intronic
GC content 0.35
exon number 2
gene id G74206
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 38722604 ~ 38750977 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

accagtggaaaatctgtttggaaaagtcTCTACATttgcgaaaccccaacttccaggtgcatcgactgagtggaagttcttggacaaagccgaaccggactgcctttgttccaaaccacacggacctcgtgccgtgtgctgttatctgagcccgaagacagagaggcctctctgcgacgaagttcagataagtttaacagtttggagttcatgattcatgacatttgagaaatcaattagaaatgttaatctgtgattcataactctagaatgtgtaatatcattttgtgttgcattaaactgtttttgttgataattttagaaataaaatctgtcaacgccgagaaatatcttctcattcctgtttaactgttttagtctgaaattgacacaagttaatagacactagattctTGGTGGCCCTGCcaatccttaatcattgaataataatcagttaagggaaattgtggtaacaagtaatgataggatctttctcggcacctaaacgtaaatgagactgatatatatatatatatatataacgagaagttacctgacataaatactaacctgcgtagttatttaatgtctgactaacaatactaatgagagactcaccttcgtcttactaaccggtattgtagtcaatatgtttataaccttttttgtttaacgatttgtgtgttatcatatgtgatcccatggtctttgatttggtcaatgaagtgatttgtctttgatttgttaatctagagttgaattttaattagtttttcccttttgtataattagtgtagtgctacatttagtctttgtttttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92615 lncRNA downstream 70263 38662138 ~ 38662455 (-) True G74174
TU92608 lncRNA downstream 83428 38648922 ~ 38649290 (-) True G74167
TU92594 lncRNA downstream 88180 38640165 ~ 38644538 (-) False G74160
TU92593 lncRNA downstream 88180 38640676 ~ 38644538 (-) True G74160
TU92567 lncRNA downstream 156750 38506192 ~ 38575968 (-) True G74137
TU92672 lncRNA upstream 24727 38775704 ~ 38776755 (-) True G74221
TU92674 lncRNA upstream 36984 38787961 ~ 38788273 (-) True G74223
TU92675 lncRNA upstream 51939 38802916 ~ 38803885 (-) True G74224
TU92683 lncRNA upstream 85918 38836895 ~ 38837139 (-) True G74232
TU92693 lncRNA upstream 116584 38867561 ~ 38867926 (-) True G74239
AMCG00014895 mRNA downstream 44657 38676409 ~ 38688061 (-) True AMCG00014895
AMCG00014894 mRNA downstream 103518 38600421 ~ 38629200 (-) True AMCG00014894
AMCG00014891 mRNA downstream 239764 38488619 ~ 38492954 (-) True AMCG00014891
AMCG00014889 mRNA downstream 308877 38415402 ~ 38423841 (-) True AMCG00014889
AMCG00014888 mRNA downstream 329924 38363902 ~ 38402794 (-) True AMCG00014888
AMCG00014902 mRNA upstream 387846 39138823 ~ 39176661 (-) True AMCG00014902
AMCG00014901 mRNA upstream 454070 39205047 ~ 39217098 (-) True AMCG00014901
AMCG00014903 mRNA upstream 512164 39263141 ~ 39270244 (-) True AMCG00014903
AMCG00014905 mRNA upstream 531177 39282154 ~ 39285347 (-) True AMCG00014905
AMCG00014906 mRNA upstream 627467 39378444 ~ 39379116 (-) False AMCG00014906
TU92596 other downstream 88180 38597368 ~ 38644538 (-) False G74160
TU92559 other downstream 241778 38490323 ~ 38490940 (-) False AMCG00014891
TU92542 other downstream 299843 38432263 ~ 38432875 (-) True G74115
TU92533 other downstream 319487 38412160 ~ 38413231 (-) True G74107
TU92499 other downstream 382427 38343322 ~ 38350291 (-) False G74087
TU92703 other upstream 147118 38898095 ~ 38920353 (-) True G74247
TU92854 other upstream 507085 39258062 ~ 39260360 (-) True G74375
TU92969 other upstream 886922 39637899 ~ 39638957 (-) True G74477
TU93111 other upstream 1150493 39901470 ~ 39983396 (-) True G74569
TU93148 other upstream 1183916 39934893 ~ 40012081 (-) True G74593

Expression Profile