RNA id: TU92854


Basic Information

Item Value
RNA id TU92854
length 2024
RNA type TUCP
GC content 0.54
exon number 4
gene id G74375
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 39258062 ~ 39260360 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cccccactgccctCCTCTCCCCCACCATGGCAGGAGGAGCCTCTTTACatagattaattttattttctttatttcatttaatatagGACTATAAAAAGGCAAAACccaataatagtagtagtagtaatagaaATACACTGTGAGAGATACAGGGAGATGCATGAGTGGGGGGTGGGCAGCCGTGTCCAGAGCAGTAGGACTCACAGGCACTGGTGGCTGGGGGCTGCGGGAACAGTCCTCTCTCTACTTCCCTCCATCCGTGATCACTGATCAAGTCTCCCAGTAGAGAGACCTGTCCGACTGCACTAGAGGCCCTCCCCGCCCGCCCTGAGACACCTGCACAGAAACCACAAAGCTTAACAACCAGAGACCCTGAGGCCAACAGTGAGTGTTAAAAGGCAAGTGGGTTTCTTGGCCAGTGTACGGACTGTGCGAGCACACGCACATGCCTACAGGTGTGCAGATCCACGCGTAGCAAGCCGCTATAACCGTTTACGTGTGCTAGATactgcatgcgtgtgtgtgagcgGTGTCCAATGGTCGGCGCTGCAAGAAAAGCCACCCGTGTTGCTGATGCATGCGTCTGCGCGAGTGGACACGTGTGTACACGATCATACCAGCTGTGACTGAAGCATGTAgtccagcacagtgcagtgcagtacagtacagtacagtacagtatggaGCAGTGCAGAGATGCAGTGGAGTACAGCCCCCTCTACTGgcagcagtgcagtacagccaCACAGCGATACAAGAGTACGGGTGCATCGATTAACTACACAGATGGAGGAAGATACAGATATGAACATTATATAACCTGAttacatgagaaaaaaaaaaaaaaaaagcgaaaaatatatataaccacATCGGAGAGGTTGGCTTTAACTATCTGAACAGCGCAAGATTATTTGGTCCCTGTGCGATTAGAGGTGGAGGCAGTGACCCCCTACCGACAGTAGAAAAATAGTCAGGCCGTCCGACAGGCCCGTGCTTTCAAAATACCATCGGCAATAATACCAGCGAGAGCAGAGATAGCGGGAGAATCAGCCATTGTGCGTCGGTCAGAGTGAGCGCGTGCGTCGCGGCTGTCGGCCCTCCCTCTCGCTCAGGCAGGATTGTCAGAGCACACAGCGGAGGTCAGATTGGAGTTTACCCCCGTGACCCTCAGAAGCAGAGCCTCGGCCTtgagggggggaggggatgCCTGGGATGAGAGTAATAACAAGCAGGAATGGAGAGGGAGGGCAGAGAGACTGAGTGcgatattgtgtgtgtgtgtgtgtgtgtcacccaGACTCCACTGCCACTGTCCTGCAGTCTCTCACACTGGAGCTCCCACTCAAGATGGTTACTCTATCAGAGAGCTAGGGATGCCGAATTAACATCCAGCCAATCAGAGCCAATTAAGACCCTAGGTGCTGGGTGGCGGAGACTGTTGTGCTGTGGGGGGGTAAGTGTGCAAGCTGGGGCAAGATTGTCTATGTGAGGGTCAGTGTGACAGACTGTTAGGGTGACTGTGTACGTCAGTGTGAGTATTTGTTGCTGGGATTGtgtctgtgtccgtgtgtgtgagtgaggtgTGCAGGTGCGCAGTGGCCATCCTCCAGCCAGTGGGTGGCACTTGTAGCCTCACTCTGGTTTGGGCTCGCTGCTCTCGCTCTTGACCTCGCCCTCCTCGTCACTGTCCACCCCCCGGCTCATCATGCGGCTGCGCAGGGCGCTGACCTCACGGTTCATGGAGTCGGCGCTCTCAGTCAGGTCCTCCAGCTCGCGCTGCATCTTCCTGCGGGCTGCATTGGCACGCTGggcctcctcctctgcctcctccagcTGCCGCTTCAGCTGCTTCACGCGGCTGTTCATCTTTTCAGCCTGGTCCTTGTACTGCTCACTGTTGCGTCTCTCGTCATCCACCTGCAGCACCACCTCCTTCAGCTTCTTTTCCGAGCGGCGGACCAGCTTGGAGGACTGCTGCCTCTCCCTGTGGAGACCGAGAGCCTCAGTACAGTCCCCAGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92846 lncRNA downstream 19298 39232304 ~ 39238764 (-) True G74368
TU92771 lncRNA downstream 75428 39182366 ~ 39182634 (-) True G74307
TU92735 lncRNA downstream 216014 39002622 ~ 39042048 (-) True G74277
TU92693 lncRNA downstream 390136 38867561 ~ 38867926 (-) True G74239
TU92683 lncRNA downstream 420923 38836895 ~ 38837139 (-) True G74232
TU92839 lncRNA upstream 33591 39293951 ~ 39295579 (-) False G74367
TU92844 lncRNA upstream 33591 39293951 ~ 39299385 (-) False G74367
TU92845 lncRNA upstream 33591 39293951 ~ 39299385 (-) True G74367
TU92843 lncRNA upstream 36632 39296992 ~ 39299385 (-) False G74367
TU92864 lncRNA upstream 41564 39301924 ~ 39302208 (-) True G74384
AMCG00014901 mRNA downstream 40964 39205047 ~ 39217098 (-) True AMCG00014901
AMCG00014902 mRNA downstream 81401 39138823 ~ 39176661 (-) True AMCG00014902
AMCG00014897 mRNA downstream 421710 38728989 ~ 38836352 (-) True AMCG00014897
AMCG00014895 mRNA downstream 570001 38676409 ~ 38688061 (-) True AMCG00014895
AMCG00014894 mRNA downstream 628862 38600421 ~ 38629200 (-) True AMCG00014894
AMCG00014903 mRNA upstream 2781 39263141 ~ 39270244 (-) True AMCG00014903
AMCG00014905 mRNA upstream 21794 39282154 ~ 39285347 (-) True AMCG00014905
AMCG00014906 mRNA upstream 118084 39378444 ~ 39379116 (-) False AMCG00014906
AMCG00014910 mRNA upstream 270966 39531326 ~ 39536843 (-) True AMCG00014910
AMCG00014914 mRNA upstream 330198 39590558 ~ 39591658 (-) True AMCG00014914
TU92703 other downstream 337709 38898095 ~ 38920353 (-) True G74247
TU92596 other downstream 613524 38597368 ~ 38644538 (-) False G74160
TU92559 other downstream 767122 38490323 ~ 38490940 (-) False AMCG00014891
TU92542 other downstream 825187 38432263 ~ 38432875 (-) True G74115
TU92533 other downstream 844831 38412160 ~ 38413231 (-) True G74107
TU92969 other upstream 377539 39637899 ~ 39638957 (-) True G74477
TU93111 other upstream 641110 39901470 ~ 39983396 (-) True G74569
TU93148 other upstream 674533 39934893 ~ 40012081 (-) True G74593
TU93146 other upstream 684370 39944730 ~ 39951070 (-) True G74591
TU93152 other upstream 724334 39984694 ~ 40012081 (-) False G74593

Expression Profile