RNA id: AMCG00015219


Basic Information

Item Value
RNA id AMCG00015219
length 741
RNA type mRNA
GC content 0.52
exon number 5
gene id AMCG00015219
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 5198087 ~ 5213200 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGACGACTGGCCTGGTGTTTCTGCAGGTGTCCTCAGCAGTGGAGATGAGCTCATCAGGAGTGACTGGAGCAGTGAGAGAAGGAGACCCTGTAACCCTGACCTGTGGCACAGGGAGCTGCTCTCCAACACAGACAGAGTTCACCTGGTTTAAGAATGGCCGGcccatctctcacacacagacaccagccAACACACTGCACTTTAATCCTGTTTCCTATGGAGACTCTGGAGACTACACCTGTGCTTTAAAAGACTATATCAACAGTTCATCTACACAGTTCACTTTGGATGTCAACTCCAAGTGGAAGACAGTGCTTCCAGCTGTCCTGGGGAGTgcgctgtctgtctgtattgtcACTGCAGTGATTCTCATCTGTGTCAGAAGGAGGAAGGCTGGTCCATCTggagaggagaaaaacagagacacagggactcCGGCAGCCATGGAGGACATATATGAGAATGTGGGATATCCACACCCCTCAGAGAAAGAGCAGTGCCAGAGCGTACCGAtagaggaggatgaagaggaCTATGAGAACATAAGCTTTCACACCAAGACTGCACCCAGGCAAGTCTCCAGGCCTCCCTCCCACCAGCACTGTGCTCCCTGTGCTGAGATAATGAGGATTCTCCCCAACCTGAGCTCCTGCTCCCAGTGCAGCCCATACAGCTGTGGCCCCTCAGTGCTGTCTTCACCTGTAACACACAGAGAGCCGCAGACACTGTTGCATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120179 lncRNA downstream 3949 5193823 ~ 5194138 (-) True G96385
TU120169 lncRNA downstream 40947 5156787 ~ 5157140 (-) True G96375
TU120114 lncRNA downstream 159596 5038290 ~ 5038491 (-) True G96329
TU120101 lncRNA downstream 176022 5021260 ~ 5022065 (-) True G96318
TU120102 lncRNA downstream 176022 5021260 ~ 5022065 (-) False G96318
TU120256 lncRNA upstream 182693 5395893 ~ 5463028 (-) False AMCG00015230
TU120259 lncRNA upstream 184894 5398094 ~ 5559599 (-) True G96452
TU120261 lncRNA upstream 195164 5408364 ~ 5451534 (-) True G96454
TU120266 lncRNA upstream 213679 5426879 ~ 5463856 (-) True G96458
TU120268 lncRNA upstream 214536 5427736 ~ 5464667 (-) True G96459
AMCG00015220 mRNA downstream 31382 5163407 ~ 5166705 (-) True AMCG00015220
AMCG00015216 mRNA downstream 72941 5119198 ~ 5125146 (-) True AMCG00015216
AMCG00015217 mRNA downstream 84567 5089834 ~ 5113520 (-) True AMCG00015217
AMCG00015211 mRNA downstream 114900 4986808 ~ 5083187 (-) False AMCG00015211
AMCG00015210 mRNA downstream 221856 4968290 ~ 4976231 (-) False AMCG00015210
AMCG00015227 mRNA upstream 21932 5235132 ~ 5241035 (-) True AMCG00015227
AMCG00015231 mRNA upstream 145359 5358559 ~ 5359929 (-) True AMCG00015231
AMCG00015228 mRNA upstream 166321 5379521 ~ 5388876 (-) True AMCG00015228
AMCG00015232 mRNA upstream 175697 5388897 ~ 5391016 (-) True AMCG00015232
AMCG00015229 mRNA upstream 177818 5391018 ~ 5391341 (-) True AMCG00015229
TU120133 other downstream 124281 5054901 ~ 5073806 (-) False AMCG00015211
TU120088 other downstream 192575 4985572 ~ 5005512 (-) False AMCG00015211
TU120090 other downstream 192575 4985572 ~ 5005512 (-) False AMCG00015211
TU120091 other downstream 192575 4985572 ~ 5005512 (-) False AMCG00015211
TU120086 other downstream 221737 4968050 ~ 4976350 (-) True AMCG00015210
TU120336 other upstream 542454 5755654 ~ 5757109 (-) False AMCG00015244
TU120487 other upstream 836277 6049477 ~ 6064159 (-) False AMCG00015256
TU120625 other upstream 1164690 6377890 ~ 6384620 (-) True AMCG00015267
TU120659 other upstream 1485657 6698857 ~ 6700357 (-) True G96766
TU120782 other upstream 1704566 6917766 ~ 6921641 (-) False AMCG00015288

Expression Profile