RNA id: AMCG00018641


Basic Information

Item Value
RNA id AMCG00018641
length 2322
RNA type mRNA
GC content 0.58
exon number 7
gene id AMCG00018641
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 16419039 ~ 16434303 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGCCCACGGTTTGTAAACCCAGCCTTGAGGAACTTGTGGCCATGggatacacacaaacacatggggAGGCTGACATCACTTGGAAGGTGTACTTTGACTGTGGAGCTGTGGTGGATGTTGTAGATGAGCAAGGCCTCGTCTTGTCTCCAGGATTTCCCTACAACTACTCCTCAGGGACGCACTGTGTGTGGCAGTTCTTTGTGCCAGTCGGCTACAGATTGACAATGGAGATGtttgattttgatgtttttgaGAGCCCTGAAAGCCTAGACCTATATTTTCCAACCCCCGAAGGGATACCCGAGGAGAACAATGATGAGACTGTGTCAACCCCTAGGGGTTCAATCAAGGATAACGTGGCATCTCCAAAAGGCTCCTCAAATCAGACACAGGTGTCCACCACGAATGCCTCTCGTGGTGACAATCAAGGACTTTCTGTGATGACATCCAAGAAGGATGACGGCAGACAAGTTGTAGTCCAGGAGCAGTCCACCAAAATGGAGATGACCAAGATTTCCAACTCTGCCAAACGGTCCACTGAACTCCTCTCTGCACCACCGCCGCCCCCTCCTCTGACCCAGGGCGTTTTATCACAGGCGCTGAAGGGCAACACGAGAGAAGAAAACTCCATCTCGGTACAGGCCTACAGGGGAGATGCTGACCCGGATGAAAAGTTCGTCCAGAGCAAGCTAGACGACAAGGGGAATGCGACGCCCACTCCAGAGACGGCCACGGGAGCCAATGAAAGTGAGGCGGACTCCCAGCCCCCCCTTATGGAGGCCTGCCCCCATGATGTTCTCTACATCTCGGACCTCATCACCTTCTCCTCCCGCTTCTGTGGTTCCAACAAGCCCACCGGCCGCAAGCTGGTCTTCGGCTCCTCGGAGGAGATGGTGGAGGTGATAATGGAGCTGATTACAACCACCCACTGGGGGCGAGGCTTCGTGCTGCTCTTTCAGTACCGCAACGAGACCGACCCAGACGATGCCCACTTCCCACAGCCCACCTCCAGCAGGACGGATGCTCTCCTGGCTGCCATGAGTGGGGCGGCCTTCTTTGTCATCATCCTCACAGGGGCTCTGTGCATCATCTTCAGaccAAAAATATGCGTGAAAGGAGCCAATGCCTGCTCATCCAACAGTCCAGAGCCTGGCCTGGATGTTACCAGtgacaatgacaacaacaaccatTCACTGATCCCGGCACAGACAGGTCCCTCAGTCAGCGGAGGGGTGGACATTTCCCACGATGTCGAGCTGGAGCTGTCCTCCAATGGAATGACAGAGCTTGAATTGGGTGCTGATGAGGTGTTTGTCATTTCTCCTGGACCCGCTCCAAGTCACCCAATTTTCTCTCCTGTCCTGAAAGACAGGTTCCTGAGGAAGAGCGAGACCAGTCCGGGCCCGGTGTGTGACTGGCTGGCCGCAGCTGCCGGGGGCCGAGGGGGGAAGGAGAGCGCCCCCAGCCGGAGCCGAGCCTGGAGTGTCCGCACCTTCCAAGACTTCCTGCCCCCTCTGCCCCAGCTGCACAGGAAGTGGTGTAGCTGGAACTCCACCAGCCCCTTCACCAAGCTGGTGGACAGCGTGGGTGCCAGCAACGCACAGGCATCTGCCAGCTCAGTAAGCGACTGTCGCAAAGCGAGAGGCAGGAAGGATCACTCAGACGCCCACCTGGAAGACGCCATGATGGAGAACCACCACTCCGACTATTACCCCCCAAGTCAGCCCTCACAGAGATCGCATCGTCTCAACTCCACCAGCAACCTGCGCAGGGCCAGATTCGTCGCCCCCTGCTTTGGGCTGCTGACCAGCTCCCCTGAAGGACCCCGGAGTCCCACTGGTCCCCTGGTGTCCAGTCCACACCCCCACGACGGTGCCCTGCATGTGACGAACGGCTCCCACACAATGGAGCAGGGCAAGGCGAGAGATTTCCCCAGCGAGGGGGAGCACGGCCTCGTCCCTGTGTTCCCCATCTCTGAGGAGGAGGACCGCCAGCCCCTGGTCCTCACGGAGCACCTCGGCCAGTGTGCGGAGCGGGACCCATACACTCAAAACATgcaggagagcaggagccctggcGGCCAGCGAGCGCCATTTACAGTCAACGGTGCTTCGTTTAGCCAGCAGTGCGTGCCCTCCGAGTGGAGCCCATGGGGAAGCCAGCACCCCGAGGACACCTGTGGCGATCCCTCAGAATCACAGGCCCAGAATGCAGACCAAGCCGAGTCGCACTGTTTATACAGCAAAGCTACTCGGATCCCATCTTGCTCTATGAACCCGATAGCCACTGGCCCACCATGTGGTGTGCTGGGCGAGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147415 lncRNA upstream 297594 16083353 ~ 16121445 (+) True G117660
TU147317 lncRNA upstream 720174 15695426 ~ 15698865 (+) True G117573
TU147318 lncRNA upstream 723786 15693213 ~ 15695253 (+) True G117574
TU147297 lncRNA upstream 791320 15627339 ~ 15627719 (+) True G117557
TU147253 lncRNA upstream 889698 15525714 ~ 15529341 (+) False G117521
TU147567 lncRNA downstream 314566 16748869 ~ 16749971 (+) True G117768
TU147592 lncRNA downstream 574595 17008898 ~ 17009246 (+) True G117783
TU147612 lncRNA downstream 719479 17153782 ~ 17155824 (+) True G117801
TU147618 lncRNA downstream 726459 17160762 ~ 17161040 (+) True G117804
TU147619 lncRNA downstream 727211 17161514 ~ 17161723 (+) True G117805
AMCG00018636 mRNA upstream 40338 16373896 ~ 16378701 (+) True AMCG00018636
AMCG00018638 mRNA upstream 120328 16296038 ~ 16298711 (+) True AMCG00018638
AMCG00018637 mRNA upstream 132376 16280833 ~ 16286663 (+) True AMCG00018637
AMCG00018635 mRNA upstream 140238 16256197 ~ 16278801 (+) True AMCG00018635
AMCG00018630 mRNA upstream 393941 16012287 ~ 16025098 (+) True AMCG00018630
AMCG00018648 mRNA downstream 637051 17071354 ~ 17090022 (+) True AMCG00018648
AMCG00018647 mRNA downstream 707086 17141389 ~ 17149356 (+) True AMCG00018647
AMCG00018654 mRNA downstream 818852 17253155 ~ 17256857 (+) True AMCG00018654
AMCG00018655 mRNA downstream 856399 17290702 ~ 17296987 (+) True AMCG00018655
AMCG00018659 mRNA downstream 1112657 17546960 ~ 17574431 (+) True AMCG00018659
TU147178 other upstream 1462459 14954564 ~ 14956580 (+) False AMCG00018602
TU147084 other upstream 1630906 14786623 ~ 14788133 (+) True G117383
TU147075 other upstream 1642545 14775789 ~ 14776494 (+) False G117379
TU146792 other upstream 2071298 14345090 ~ 14347741 (+) True G117178
TU146730 other upstream 2177002 14239498 ~ 14242037 (+) False AMCG00018551
TU147595 other downstream 633909 17068212 ~ 17069670 (+) True G117786
TU147848 other downstream 1546907 17981210 ~ 17982114 (+) False AMCG00018681
TU147849 other downstream 1546907 17981210 ~ 17982303 (+) False AMCG00018681
TU147936 other downstream 2284903 18719206 ~ 18721343 (+) True AMCG00018702
TU148213 other downstream 3014323 19448626 ~ 19450628 (+) False AMCG00018740

Expression Profile