RNA id: TCONS_00000073


Basic Information

Item Value
RNA id TCONS_00000073
length 479
lncRNA type retained_intron
GC content 0.46
exon number 2
gene id XLOC_000036
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 1712140 ~ 1796832 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATTGACCCCACCTCCTACAACTCCACAATGGGTGAAGTTCTGCAAACAGCTCTTCGGTGGTTTCCAAACTCTGCTGTGGTTCGGTGCATTCCTTTGTTTCTTAGCTTATGGAATCCAGGTGGCATCTGTGGAAGACGCGGCACATGACaatCTGTACCTGGGACTTGTGCTTGCGTTTGTGGTCATAGTCAATGGATGGTTCTCATTCTATCAGGAATCCAAGAGTTCCAAAATCATGGAGTCTTTCAGGAATCTTGTTCCACAGGTAAAGAAAAATGTGTCCTTTAATGTCCGAATGTAACTTGGTACGTGGTACTGCAGTAGTCATTGTTCTGTTCATTCAGCAAGCTCTAGTTGTGCGGGATGGAGAGAAAAAGGTCATCAATGCTGAGGAGGTCGTTGTCGGTGATCTTATAGAGGTCTGTGGTGGAGACAGAATCCCTGCTGATCTGCGAATTGTCTATGCACAAGGATGCAA

Function

GO:

id name namespace
GO:0006883 cellular sodium ion homeostasis biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0007507 heart development biological_process
GO:0002027 regulation of heart rate biological_process
GO:0003143 embryonic heart tube morphogenesis biological_process
GO:0071599 otic vesicle development biological_process
GO:0021591 ventricular system development biological_process
GO:0036376 sodium ion export across plasma membrane biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0035051 cardiocyte differentiation biological_process
GO:0010172 embryonic body morphogenesis biological_process
GO:0048840 otolith development biological_process
GO:0060974 cell migration involved in heart formation biological_process
GO:0048854 brain morphogenesis biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0030007 cellular potassium ion homeostasis biological_process
GO:0008016 regulation of heart contraction biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0007420 brain development biological_process
GO:1990573 potassium ion import across plasma membrane biological_process
GO:0030916 otic vesicle formation biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005391 sodium molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0008556 potassium transmembrane transporter activity, phosphorylative mechanism molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-001212-2 Predicted to enable P-type sodium:potassium-exchanging transporter activity. Acts upstream of or within semicircular canal morphogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including immature eye; integument; intermediate mesoderm; nervous system; and yolk. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2DD. Orthologous to human ATP1A1 (ATPase Na+/K+ transporting subunit alpha 1).

Ensembl:

ensembl_id ENSDART00000144313

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000071 lncRNA upstream 59288 1730392 ~ 1731484 (+) False XLOC_000036
TCONS_00000065 lncRNA upstream 84892 1705130 ~ 1705880 (+) True XLOC_000035
TCONS_00000064 lncRNA upstream 99747 1690047 ~ 1691025 (+) False XLOC_000035
TCONS_00003014 lncRNA upstream 171458 1617203 ~ 1619314 (+) False XLOC_000034
TCONS_00000077 lncRNA downstream 106386 1898909 ~ 1899843 (+) True XLOC_000039
TCONS_00003015 lncRNA downstream 209193 2001716 ~ 2005632 (+) True XLOC_000043
TCONS_00002808 lncRNA downstream 230886 2023409 ~ 2023645 (+) True XLOC_000044
TCONS_00000101 lncRNA downstream 504068 2296591 ~ 2299546 (+) True XLOC_000048
TCONS_00003016 lncRNA downstream 1926143 3718666 ~ 3720603 (+) True XLOC_000053
TCONS_00000066 mRNA upstream 59208 1712140 ~ 1731564 (+) False XLOC_000036
TCONS_00000063 mRNA upstream 84613 1689775 ~ 1706159 (+) False XLOC_000035
TCONS_00000062 mRNA upstream 176272 1599979 ~ 1614500 (+) True XLOC_000033
TCONS_00000059 mRNA upstream 819821 961607 ~ 970951 (+) True XLOC_000027
TCONS_00000058 mRNA upstream 1182525 604127 ~ 608247 (+) True XLOC_000025
TCONS_00000074 mRNA downstream 12771 1805294 ~ 1815660 (+) True XLOC_000037
TCONS_00000075 mRNA downstream 45641 1838164 ~ 1850104 (+) True XLOC_000038
TCONS_00000076 mRNA downstream 104214 1896737 ~ 1899848 (+) False XLOC_000039
TCONS_00000078 mRNA downstream 111896 1904419 ~ 1911381 (+) True XLOC_000040
TCONS_00000079 mRNA downstream 123444 1915967 ~ 1923253 (+) True XLOC_000041
TCONS_00000070 other upstream 58446 1719207 ~ 1732326 (+) False XLOC_000036
TCONS_00000068 other upstream 67615 1717697 ~ 1723157 (+) False XLOC_000036
TCONS_00000067 other upstream 72245 1712153 ~ 1718527 (+) False XLOC_000036
TCONS_00000061 other upstream 215209 1575483 ~ 1575563 (+) True XLOC_000032
TCONS_00000060 other upstream 571967 1218691 ~ 1218805 (+) True XLOC_000029
TCONS_00000094 other downstream 398177 2190700 ~ 2214397 (+) False XLOC_000046
TCONS_00000098 other downstream 479738 2272261 ~ 2288773 (+) False XLOC_000048
TCONS_00000099 other downstream 483082 2275605 ~ 2275742 (+) True XLOC_000049
TCONS_00000100 other downstream 494326 2286849 ~ 2299546 (+) False XLOC_000048
TCONS_00000102 other downstream 509435 2301958 ~ 2302623 (+) False XLOC_000050

Expression Profile

//