RNA id: TU147595



Basic Information


Item Value
RNA id TU147595
length 1211
RNA type TUCP
GC content 0.40
exon number 2
gene id G117786
representative True

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17068212 ~ 17069670 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ACTGCTTCCATGCATTACAAATATGCCAGACAGCTGCTGTTGATTAATGAATAGCTCCATTTATTTACAACAACACCTATTGCTTAAGTCTTGTCAGCACATTATCATTAACAACAGgagaattgttttaatgtgtaatgaAGAGTTAGTGATCATTCAGTGGTGTGTGCCAAGTTGCAGGAGTATTCAAGATTTAAGATTAAACAGCAATCGTGTATGGTAgcacattaattaaatgcatcaaattaaaaagaaaataagaataatgtgtaatactgtttttatcAGCATAAAAAGGCATCCCTGTATTATTTATGTGGAATCTTGTTTTATGTATAAGAGGGTTCAacaattattcaatattttcagtGCACCAGCAAGTGTGGTAAAAGACACCCACACCCAGTGAAACCCCCATCCAAAAGGACacaggataaaataaatatataaataaaaacactcaaaaaacaataaataaacacttctgTCAACATTATAAATTCCATCCATTATCATACCATTCATACcaatacattgtataaggaATCCATGTGATTGATTAGCACTTTTTTGCAATTATGCATCAACAATGACTTGAAACTGCAAGAGAGGTGACAGAGATCAAAGACTTGTGTCAATCTGCTGCAAATCAATTATctacatacataaacaatgcatcacaacattttctttttcaaatgcaaacaactataaaaaaaaaagggattcTAACTTCCATCAAGCCAGTTTCACCATCCTTTCACTGGCTTCCCATAACTTCTTAGCGACTCCTGCGTCCTTTGCAAAGGGCCTCAGGGCTGTGTGCTGGCAGTCAATAAAGAACCCCCCACTGTACGGCAGCACGTCATCTGATACGGCACAGTAGATGACAGTCTGCGCACCAACCCTGGATGTATGGCATAGGCAGTCACTCCTTTCCCCTCCATCAGTCTGGACAATTCGTGAGTGAAGTAGATATTTGCCAGCTTACTGCGGCAAAAGGAGAAGAAAGGCACAATGTTATAGTTCAAGTCCTGGAAGTCAAGCTTCTGGTACTTGTAAGCCGTGGAGGTCAGGGTGATGACTCGGCTCGGGGAGCACTCTTTCAACCGGCCGAGCAGGAGATTCGTGAGCAAGAAGTGGCCCAGGTGGTTGACCCCAAAACACATGCTAAAGCCGTCGTCTGTCCAGTCAAGGACACTTGGCATTCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU147592 lncRNA upstream 58966 17008898 ~ 17009246 (+) True G117783
TU147567 lncRNA upstream 318241 16748869 ~ 16749971 (+) True G117768
TU147415 lncRNA upstream 946767 16083353 ~ 16121445 (+) True G117660
TU147317 lncRNA upstream 1369347 15695426 ~ 15698865 (+) True G117573
TU147318 lncRNA upstream 1372959 15693213 ~ 15695253 (+) True G117574
TU147612 lncRNA downstream 84112 17153782 ~ 17155824 (+) True G117801
TU147618 lncRNA downstream 91092 17160762 ~ 17161040 (+) True G117804
TU147619 lncRNA downstream 91844 17161514 ~ 17161723 (+) True G117805
TU147622 lncRNA downstream 154342 17224012 ~ 17224609 (+) True G117808
TU147627 lncRNA downstream 181199 17250869 ~ 17253023 (+) True G117813
AMCG00018641 mRNA upstream 633909 16419039 ~ 16434303 (+) True AMCG00018641
AMCG00018636 mRNA upstream 689511 16373896 ~ 16378701 (+) True AMCG00018636
AMCG00018638 mRNA upstream 769501 16296038 ~ 16298711 (+) True AMCG00018638
AMCG00018637 mRNA upstream 781549 16280833 ~ 16286663 (+) True AMCG00018637
AMCG00018635 mRNA upstream 789411 16256197 ~ 16278801 (+) True AMCG00018635
AMCG00018648 mRNA downstream 1684 17071354 ~ 17090022 (+) True AMCG00018648
AMCG00018647 mRNA downstream 71719 17141389 ~ 17149356 (+) True AMCG00018647
AMCG00018654 mRNA downstream 183485 17253155 ~ 17256857 (+) True AMCG00018654
AMCG00018655 mRNA downstream 221032 17290702 ~ 17296987 (+) True AMCG00018655
AMCG00018659 mRNA downstream 477290 17546960 ~ 17574431 (+) True AMCG00018659
TU147178 other upstream 2111632 14954564 ~ 14956580 (+) False AMCG00018602
TU147084 other upstream 2280079 14786623 ~ 14788133 (+) True G117383
TU147075 other upstream 2291718 14775789 ~ 14776494 (+) False G117379
TU146792 other upstream 2720471 14345090 ~ 14347741 (+) True G117178
TU146730 other upstream 2826175 14239498 ~ 14242037 (+) False AMCG00018551
TU147848 other downstream 911540 17981210 ~ 17982114 (+) False AMCG00018681
TU147849 other downstream 911540 17981210 ~ 17982303 (+) False AMCG00018681
TU147936 other downstream 1649536 18719206 ~ 18721343 (+) True AMCG00018702
TU148213 other downstream 2378956 19448626 ~ 19450628 (+) False AMCG00018740
TU148369 other downstream 2901469 19971139 ~ 19974730 (+) True AMCG00018762

Expression Profile