RNA id: TU74584


Basic Information

Item Value
RNA id TU74584
length 2308
lncRNA type sense_over
GC content 0.52
exon number 3
gene id AMCG00019920
representative False

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 2962508 ~ 2969595 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCCGCAGCCCCGCAGCGCCGCTCCCGTCCCGCAGCCCCGGGCTTCCACACAAACACGCATCAGTCTGTAAAGCACAGCAGCGCTGCCGATAACCTCTCCGACGGTCCAGAACTACCTGGAAAACCACTGTAGCAACGCCACAGACCGCCGCGTCCTCGCTCTGTTCCTGGACATCGTGAATGAGCTGAGCGGCACCCTGCAGCTCCTGGAGGCCCGCAGCCCGGTTGGTGTGCCCGTCGATGACCGTCTGGACGCCTGCCGGACGCTGCTGAGCCCCAGCACGGACATCGCCGGCCTGCGCGCACACTACCCTCACGACGAGCTGAACCGGCTGAGCTGCGACGAGGCCAGGAATTATTACGGGGGGGTGGTGAGCCTGCTGCCCCTGGCCCACGAGCTCCTGCTGCAGGCCACGTCCAGCGCCAGCGCCTACAAGAAGAGGGTGGCATCGGAGTCCCACCCGCCTCCAGAGCCCAGCTTGGACCGCCGGAACAGCGTCACCAAGGAGCGGCCCACCTCCTACAACGGGCGTGTCACCAAGCACCCCGGCCACTCCCACGGCAAGGCTCCGGGCGGCTGGCACATGGGCAAGCCGGCCTGGAGACCTCCTGGGCGCACAAATAAATGCTGAGGGGCTTCCTGCGTTCAACTCTTAGAGCAGCGCTGATTTCTGACTAAGAGAAATAGGAATATTAATCGTGCCCGCGCTGCGACTTCACTTCTCCTCTCAAGAGGCAGCACAGTGCCCGTGTGGCAGTATGGTTTCCATGAGTATCCATAAGGGTCTGTCCTTTCTAATACATCCAAACCACAGAGATTTAGGTACAGCCTTACAATAAATCACATCTTCCTGGGCTTTGCTaggtaattgtttaatttaagcaATGTCCATTTCCATTAACTATTTGTATTGCAACACATTGACCCATTTATTTCAGACGCGGTCATTACACTGAAGTTTCGATATACGGGGACATCGTTTCCACTAGGAAGGGAAAAGATCCAGTGCTATGACAGGCGACTAGAGACATCCTCCAttaacagacagacagcagagcTCTTTGTGGATTTGGCTCTTGACATCTCGATCACTAACCGTGCCAGGCAGGGGGGCGAGACCCCACACACCGACTGCGGCTCCCATACAGCGTCGATCAGAAGACTCAACTAGGCACTAGATAACCCAGGGAGTCCACTGCGTCCTGCACCGTggtcctgacacacacacgccacGATTCGGGGCTTCAGCCAACCTGTGAAAGCGCGTGTATCGGCAGATACTTCTGCTTGTTCAGGCGGCGGCCAGGTGTGAGATATTGGGTCGCTCTTCCTCCCGAACTTCACTTTAAAACTCCATTAAACAGCAGCACAAGGTAACATCAAATCTGTGTTTAATGTCTGAGCACAGCGAACTAGAGCGACTCAAATTAAGCAACAGGTTGAGGCAGAAAAGTGGAATTGTATTAATGGCGAAACCTGGTCTATGGGTGTCACTTTAAAAGAGCAATACTGTGTGCTATGATGCTGCTTTTTGGGACAATACCATGTCCACCTATGACCTGTATGCAGAGAAAGTCTTTTGGTTGCCAGTCACCATAAACAGATTTCGTTGGTTTCCCTGGCAGATACCTCAGATCAAACTCCGAACCAATTACTGACATTTTGTAAACAGACACTCAAAtgcactgacagacagacagttctCCCCAGTGTGGCACCGCATGGCTGCGACAGGCTGTCAGCTATAGTTACAGAACAGGAGCGCGTGAGCTTCGGTGAGCGACGTCTCGCCTACTTTCCTGGAAGAGGTGTGGAATCGATGACCAGATGTGATCATTTGTGGTTTTTCCATGTTTTCCTTCCCCCTCAGTGGGAGCCGTGTGCATGTGTTGCTATGGCTCATTGGAGAGCTACGAATTTCAAATCTGAAATCGTATCTCAGTGTCCCACGCTGCCCCCGGCCACCTTGTGCTGCAGTATAACATGGGTCCTCTGCCCACCACAGGTTAGCTTTCCTTAAGCGAGGATCAGATTCCCAACTGGAGTTCCCAGACGTGCAGTGGTCAACATTTCCACCCTGCAGACCCTATCCCTGGTCAAATCAATGTTGCCACACTTTTTAGAGGAGTCATTCACATAATAATCTTGAATCCAGAACCTCAAATtccagaataataataaaaaaaagttagaataaaggaattgtgtgtttatatagtttGCACATAGGAAACACTTTCTTAGAAGTATAgccacaattttattttataagcaaaTGGGAATGAAATCAACCTTAATTGAATAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74574 lncRNA upstream 77092 2883714 ~ 2885416 (+) True G59646
TU74563 lncRNA upstream 135871 2825591 ~ 2826637 (+) True G59638
TU74548 lncRNA upstream 174269 2787910 ~ 2788239 (+) True G59625
TU74500 lncRNA upstream 245593 2715528 ~ 2716915 (+) True G59578
TU74467 lncRNA upstream 328378 2583694 ~ 2634130 (+) True G59557
TU74654 lncRNA downstream 62300 3031878 ~ 3034341 (+) True G59700
TU74670 lncRNA downstream 138222 3107800 ~ 3109882 (+) True G59714
TU74671 lncRNA downstream 146940 3116518 ~ 3116819 (+) True G59715
TU74672 lncRNA downstream 147636 3117214 ~ 3117452 (+) True G59716
TU74673 lncRNA downstream 147944 3117522 ~ 3117909 (+) True G59717
AMCG00019921 mRNA upstream 43627 2910244 ~ 2918881 (+) True AMCG00019921
AMCG00019915 mRNA upstream 85690 2869705 ~ 2876818 (+) True AMCG00019915
AMCG00019917 mRNA upstream 95544 2852209 ~ 2866964 (+) True AMCG00019917
AMCG00019916 mRNA upstream 152507 2790773 ~ 2810001 (+) True AMCG00019916
AMCG00019910 mRNA upstream 194445 2742701 ~ 2768063 (+) True AMCG00019910
AMCG00019926 mRNA downstream 26286 2995864 ~ 3004905 (+) True AMCG00019926
AMCG00019925 mRNA downstream 46656 3016234 ~ 3020777 (+) True AMCG00019925
AMCG00019924 mRNA downstream 54811 3024389 ~ 3031475 (+) True AMCG00019924
AMCG00019930 mRNA downstream 160351 3129929 ~ 3141283 (+) True AMCG00019930
AMCG00019929 mRNA downstream 172869 3142447 ~ 3147034 (+) True AMCG00019929
TU74243 other upstream 1884445 1075504 ~ 1078063 (+) False AMCG00019884
TU74166 other upstream 2516978 441598 ~ 445530 (+) True G59305
TU74774 other downstream 271861 3241439 ~ 3250062 (+) False AMCG00019934
TU75012 other downstream 1854235 4823813 ~ 4835797 (+) False AMCG00019967
TU75242 other downstream 2386194 5355772 ~ 5361863 (+) True G60137
TU75235 other downstream 2388886 5358464 ~ 5359365 (+) True G60132
TU75390 other downstream 3213134 6182712 ~ 6186084 (+) False AMCG00020000

Expression Profile