RNA id: AMCG00019921



Basic Information


Item Value
RNA id AMCG00019921
length 4324
RNA type mRNA
GC content 0.57
exon number 5
gene id AMCG00019921
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 2910244 ~ 2918881 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GGGGTCCTGAGGAGTCCTCCTTTCCTGTTTAGAAACGTCATCAAAACAACCGCCCTCGCCCACGTCATTTCCGGGAGACGCGGGTCTTATTTTCCTGTGGAAAATGGCGGCGTCGAGCCCAGATCGCGCTCTAGCCGGGGGAGGAACCGAGCCTGCGGCAGAAGCGGAGCCTGACTCGGATCCATGGGCGGGACTGGGGCCGATCGTCAAACGGGACCCTGTAGTTAAGCTTCAGAGCCCGGTGAGCGGCCTGGAACCGCTTTCGTGGTCCGAAGACCACCGACTCTCGGCCTCCAGCACGAATAGCATCTCGCTAATGGAGATCGTGTGCGACATCCACGGCTACGGCCAGGACCTGGTCATCCACCGGACCTCCATCCCCGTGCCGGACTCGCCCTGCGTGCTCAAGgtggGTCCGGAGGAGCTGGTGTCGGAGCTGAAGGAGAGGTTCGCCAACTCTAAAGACCCGTCGGTCAGCCAGCCCTTCATGCTGGACCGGGTCCTGAACCCATCGGCCGGGTCTCTGCCCCCCCTGCGCGGGTTCAAGTACACCAGCTGGTCTCCGCTGGGCTGCGACGCCAACGGCCGCTGCCTGCTGGCCTCCCTGACACTGGACAACCGGCTCACCATCCACGGCAACCTGAACCGGCTACAGTGGACCCCGCTGGTGGACCTGACGGAGCAGTATGCCGAGATGCTGGAGGAGAAGGACTACCAGCTGCTGGGGGCGGAGCCGCCACGGGGGGAGCTGCAGGACCCACCCGAATTCCAGCGGCGCCACCGGATGCAGTGCCCTGTGCGCATGGAGTGGTCCAGCGTCTGCACCACGCAGCAGGTACAGACCAACAACGAGTGCAAGGACGTGGGCACGGTGCTGCTGGCCGTGCTGCTGGAGAACGGTGACCTGGCCGTGTGGCAGTTCCAGCTGCCCTTCCATGGGAAGGACTCCGTCGTCTCCTGCAACACCATCCAGTCGGGCGTGTCAGCGCCCAGCGTGCTGGCCTGGTGGGAGTACGAGCACGGCGGGCGCAAGATGAGTGGCCTGATCGTGGGCAGCTCCGTGGGGCCCGTCAAGATCCTGCCGGTCAACCTGAAGGCCGTGAAGGGCTACTTCACCCTGCGGCAGCCCGTGGTGCTGTGGCAGGAGACGGACCAGATCCCTGTGCACAACATCAAGTGCATCTCCCTCTACCACCCCTACCAGAAGTGCAACTGCAGCCTGGTGGTGGCCGCCAGGGGCTCCTACCTCTTCTGGTGCCTCCTGCTGATCTCCAAGGCCGGCCTGAACGTGCACAACTCGCACGTCACGGGCCTGCACTCGACGAACATCTCCTCCATGACGGCCAGCCGCTACGGGGGCTCCATCTTCACCTGCTCGGCCGACGGCAACGTCAAGAAGCTGACGCCCATCTTCACAGACGTGGCCGTGATGTTCAAGCAGGAGCTGATCCGACTGCCTGACGGGGTGGCCGGCCGCAGGACGCACGGCATCGCGGTCAGTCCCAACGGGGCTTACCTGGCTCTGGTGACCACGGAGGGCCTGACCAACGGGCAGCACCCGGTCAGCCGGAGCTACCAGGTCCAGTTCGTCACCCTGAAGACTCCCGACGACGCGGCGGCCGAGCTGCTGGAGTCCACCATCCAGAACCTCTTCAAGCAGACGGACCTGCTGGACCTGGTGCGCTGGAAGGTACTGAGGGACAAGCGCATCCCTCCCATgctgcaggaggagctggacGAGAAGGTGCACACCTCGGGCTCCACCTACCTGTGGCGCTTCAAGCTGTTCCTCTTCCGCGTGCTCTACCAGTCCCTGCAGAAGGCCCCGGCCGAGGCGCGCTGGCGGCCGTCCCACGAGGACACCAAGGTCTTCATCGGCGATGAGGAGGGTGAGGAGGACAGCCAGGAGGCCGGCGGGGGGGCCTCCACCTCCGAGGGCGGCGGGGGCAGGGCGCTGGATGACGGGGCGGGGGGGGCCACAGAGGAGCAGATGAGCGAGATCATCGCCTGGATCGAGGCGGTGGAGTCGCACCTGACGCGGGAGCACATGAAGAGGGTGCTGGGGGAGGTGTACCTGCACACCTGGATCACCGAGAACACCAGCATCCCCACCCGGGGCGTCTGCGACTTCCTCATGAGTGACCCCACCTACGAGGACAGGGCCGCCAGGGTGCTCATCGGCCACATCTTCAAGAAGATGAACAAGCAGACGTTCCCGGAGTACTGCAGCTTGTGCAAGGAGGTGCTGCCCTTCACCGACCGCCGGCAGGCCGTCTGCTGCAACGGACACATGTGGCTCAGGTGTGTGCTGTCATACCAGGCCTGTCAGACGATCACGTACAGGAGGTGTTTGCTGCAAGACAGTATTGCCAGACATCCCGTGCCTGACGATCCCGACTGGATAAAGCGGATATTACAAGGACCCTGTACTTTCTGTGACTCCCCGCTGTTCTAGGGAAGGAACGGGGAGGGATTTTGGGGGGATCAAGCGAGACGAGACTGCTCGAGGCAAACAGACGCAACTCTCAACTTGACAGACGTTTCACACGGGAGACGCCGCTATCCtgataaattgttttttttttatcctgcgttatttggaaaaaaaaaaaaaaagtaaaagctttAAGCAGCCCTTAATATAAAAAACCCATCCCCTTGGAAAGGAAATCGCAGTTTCTACGCTGGAAAATATTGGAAACTGAAAGCACTCAAAAGGAAGCAGTTTGAGTAGAAATCGTCGGCTCATTTACGAACATTGTGAACATTGTTATGAAAGTGGCTTTTCCACATTACTctcgcccccccaccccattccTGTCAGTCACTCCGTTCGGAGAACAATATGCTCGATCAGTCCTGTAATTTCTCTGTAACACACTTTAATTCATCCCCAGGtctcgttaaaaaaaaaaaaaaaatacaaacgaAACAGCGTCTCGTTCCACACGCTCGGAGAGGAGTTCACACACAGCCGCGCCAAAGACAGAGCTCGGTTAAAAACTAATTTGGCCGCCCTCACGGGATCCCGGCTAATGAGATTCTGCCATAATGAGGGCGAGATCCTGCCGGCAGACGCAGGACTGATTTTAATTAAGGGGGTCGGAGTGCGCGTTGTTCGGTGTGATTAACCCTTCTCGGAGAACACGGGCCTGGGGAGGAGGTGTTCAGGACTGCGACACTCGGGACTCCCTCGCCTGCTTTCCATGACGCGCGGGTTCGTGGCCTCGGCGTGTCCCCGGACCCCCCGGAGAGGAGAGCGTGGCTGCACCGGGGACTCGGCAGCTCTGCGCTCGTGCTGTGGCGGGGTCAACCCAGATTGAAACCCCTATTCCAGAATGTTCCAGTGAAATAAGAACGatgtacatgtttattattattattattactactactattattattattatttcccgaTTTTATTATGTGTTACATATCCGGGTCAggggaggacagagagaaatGATTCGGAGGTTTAATAGTAATGCAAAGGAAGGCTGATAAATGGTAGAATTATTGAAGCCACCAGACGACTAGATCAGTTTTCCAGCACAGAGCGAGACCCGTTAATGGGATGCTAAACAGAAAACACGTAGCCAAagccagaaaaaacacacattttcgaAGCACTTTTGTTTTAGAGTCCCAGTATGTAAGCTATTTTGTGTTCACGGTCATTTCTTTTTGTTGCGCTTTATTAAATTGCCCACTCCATGTTTTGGGCGAGTAGAGCTGGTAATAAGGTGTATTGTTTTAGTCGTGTGGACCCTTCGGTTTCCTTTCAACTCGACCTGGGTGCTACACGGACACTTCTGGTGCGTCTGGCCGGCCGTTGCCTCATTTGAGACGATCATGATTTCACTAGACTGGGAAGAGCTTCCACACGGTGCCGACCGATCCGAAGCAACTGACCTAAAATTAAATAAGCCTCGCGCCCCGTACGGCACAAACGAGTTCGTTCCCCTCAGTGTGTAGCGGTGACTAGGAGAGCCGAGAAAGTTGTTCCCGTTTTGCGGCCCAGTGTTTCCTCACTACTGTGATCCTTGGGGTCTAGGAGCCCCCGATTAAAGGAAGCCTGATATACTACACCCCCGAATCCAGGCCCACACATGTCCCCTCGCCTCGTCCTGCGTGGTTTAGGCAGCCGATTTCATTCCCTGTCCATGGTGCTCTGCAGGAAGACGAACCCAGGGGCCGGAGCTCTTCGGGGTTGTGTGGCCCCCATTATCGCATGGCCCCAATTTTTAGCCAAgaatttgtgtatgtatttttgttgttgttgttcttgtaaaTAAACTTGGGTTTTTAAGTCTTTTGTATACAG

Function


GO: NA

KEGG:

id description
K11310 GTF3C4, KAT12; general transcription factor 3C polypeptide 4

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU74574 lncRNA upstream 24828 2883714 ~ 2885416 (+) True G59646
TU74563 lncRNA upstream 83607 2825591 ~ 2826637 (+) True G59638
TU74548 lncRNA upstream 122005 2787910 ~ 2788239 (+) True G59625
TU74500 lncRNA upstream 193329 2715528 ~ 2716915 (+) True G59578
TU74467 lncRNA upstream 276114 2583694 ~ 2634130 (+) True G59557
TU74584 lncRNA downstream 43627 2962508 ~ 2969578 (+) False AMCG00019920
TU74654 lncRNA downstream 112997 3031878 ~ 3034341 (+) True G59700
TU74670 lncRNA downstream 188919 3107800 ~ 3109882 (+) True G59714
TU74671 lncRNA downstream 197637 3116518 ~ 3116819 (+) True G59715
TU74672 lncRNA downstream 198333 3117214 ~ 3117452 (+) True G59716
AMCG00019915 mRNA upstream 33426 2869705 ~ 2876818 (+) True AMCG00019915
AMCG00019917 mRNA upstream 43280 2852209 ~ 2866964 (+) True AMCG00019917
AMCG00019916 mRNA upstream 100243 2790773 ~ 2810001 (+) True AMCG00019916
AMCG00019910 mRNA upstream 142181 2742701 ~ 2768063 (+) True AMCG00019910
AMCG00019907 mRNA upstream 240231 2666705 ~ 2670013 (+) True AMCG00019907
AMCG00019920 mRNA downstream 43630 2962511 ~ 2969595 (+) True AMCG00019920
AMCG00019926 mRNA downstream 76983 2995864 ~ 3004905 (+) True AMCG00019926
AMCG00019925 mRNA downstream 97353 3016234 ~ 3020777 (+) True AMCG00019925
AMCG00019924 mRNA downstream 105508 3024389 ~ 3031475 (+) True AMCG00019924
AMCG00019930 mRNA downstream 211048 3129929 ~ 3141283 (+) True AMCG00019930
TU74243 other upstream 1832181 1075504 ~ 1078063 (+) False AMCG00019884
TU74166 other upstream 2464714 441598 ~ 445530 (+) True G59305
TU74774 other downstream 322558 3241439 ~ 3250062 (+) False AMCG00019934
TU75012 other downstream 1904932 4823813 ~ 4835797 (+) False AMCG00019967
TU75242 other downstream 2436891 5355772 ~ 5361863 (+) True G60137
TU75235 other downstream 2439583 5358464 ~ 5359365 (+) True G60132
TU75390 other downstream 3263831 6182712 ~ 6186084 (+) False AMCG00020000

Expression Profile