RNA id: AMCG00019925


Basic Information

Item Value
RNA id AMCG00019925
length 2173
RNA type mRNA
GC content 0.60
exon number 12
gene id AMCG00019925
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 3016234 ~ 3020777 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGCGGCCCGTGTTTCCGGCGGAGTCGTTTTCGCGGCGGGACTGTCATGGCGGCGATCAGATAAAGCACAGATGCGTGAGAATAAAACGGGAAACCAACAGCATCACACGTTCAACCGCCAGATACGGAGATTTAGCGATGACATCTAACGATACAACACCGGCAGAGGACTCGGCAGACCCCGCGGGTCTCCGGGCCCCGGGCAGCACGGCGGTGCTGTCTCTGCCGCCGGAGCGGCTGGTGTGCGTGGAGTACCCCTGCCGGGTCCGCAGCGTGGGCAGGATGCTGGAGACCGTGGGGGGCGAGGAGGGCATGTCGAGGgcCTACGCCGACTCGACCAAACGTCTGGAGCTGAACTTCCGCCCGAGGGACCCGTACTGTCACCCGGTGTGCGGCAACCGCTTCCCCTCCACCAGCCTGGTGCTGCGGGTGCGGCGGCGGGTGCGGAAAGGGGGCGGCGAGCCGGGCAACGGGGCCCCCCCCGAGCAGGGCGACATGAGCATGGAGATCCTGGGCATCATTGGGACCACCTACAAGTTTCAAGGCATGGCTGACTTCCAGTACCTCGCCGTGCACTCGCACCCCGACGGCACCCAGACCTCCCTGTACGACAAGATCCTGCTGCGCCAGCCGGAGAAGAAGGAGTTTTTCGACAAGGACGTCCCTCTGTTTATCCCCCCTCCCATCTTCTCCCGCCTCGATAACCCTGTTGACTACTTCTACCGCCCTGAAGTCCAGCACagAGAAGGCTACACACCCCCTACGCTGTCCAGCGAGAATCTGATTGGGCTGAGCCGGGCCCGGCGCCCCCACAACGCCATCTTCATCAACTTCGAAGACAAGGAGGTGCCCATGGGGCCCCTGGAGGCCGCCGTGCAGAACTGGCAGCGGGTGTGCAACCACCCCAACGAGCGCCGGGCCGAGGAGGAGATGAGGAAGGCGTTCAAGGCCCAGGTCATTGCCAGTGATGGCAGAGACGTGTCTCTGCCATCACTGCTGTTCGAGATGCGACCCGTGTGGTCCCGCAACGCGGTGAAGAGCAACCTGGAGATCCACCCCGAGAAACTGAAGCTGCTGCTCCCCTACGTGGCCTATTacatgCTGACGGGACCCTGGCGCAGCCTGTGGGTGAGGTTTGGCTACGACCCCCGGAAGGACCCCAAGGCCAAAGCCTACCAGGTGCTGGATTTCCGGATCCGCTGCGGGATGAAGCACGGGTACACCCCCAATGACATGCCGGTGAAAGCCAAGAGAAGCACCTATAACTACAGCCTGCCCATTACCGTCAACAAGACCGtgCCCCAGCCTGCCAGCCTGCAGGAGATCACCCAGAGCCTGGAAGGGCCCTCGAATGCCAGCGGCCGCAAACCCGCCCCGCTGAGATACAAACTGAAGGAGTCGGCCTATGTCTTCCGTGAAGGCACCCTGCCGCCCTACCGCCAGATGTTTTACCAGCTGTGTGACCTGGAAGTGGAAAGCTTGAAAAAGATCATTTACCAGAACGacggggaggaggaggagtgcaACGAGCGAGACGGCTGGTGTGTCTCCAAAACCAGTGACCAGCTGCGGGACATCATGTCTGGCATGATTAAGCAGATCATCCGCTCCAAGAGACCAGCTCTCTTTCCCACTAAGGCCAAGCGCTCCTCCACCAGTAGTGCTGCAGGGGCCCTGGACATGGAGagtggggaggaggaagaggaggaggatgacgaGGAAGAGTTCCAGCCATCAGAGGGCAGCGACAATGAAATGGAGACCGAAATTCTTGACTATCTGTGACCCAGGTGGCCCCTGCCAGCCTGCCACTGCCTCCTGGTACCCGACTGGATGTGGAGAGGAGACTGGAGGAGCCCTGAGCCCCTGTCCCTCCCAGCAAGTCCACAGTCAGGAGGGGAAACTCCTGCAGGACAACGACTGGAGGCTCAGACGCGCTCTCCGCTCTACTGGACACCTGACGAAGGACAGCTCTCCTGCTCGATGACTCGAGTTTCTCAGAGGGGACTCCTGCAGTATCGGGAGACCTGAGTCTTCTCTTGAGCTCCAAAACAATGTAACGCTGAGTGTAATAAAAGGTTGTGTTTTTCTCGCATTGTTAACGCCACGTCTGcgtattttgttttccagttacTTTTGAAACTGTTCCCAAACATCTCTGTCACACGATGGA

Function

GO: NA

KEGG:

id description
K15202 GTF3C5, TFC1; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74584 lncRNA upstream 46656 2962508 ~ 2969578 (+) False AMCG00019920
TU74574 lncRNA upstream 130818 2883714 ~ 2885416 (+) True G59646
TU74563 lncRNA upstream 189597 2825591 ~ 2826637 (+) True G59638
TU74548 lncRNA upstream 227995 2787910 ~ 2788239 (+) True G59625
TU74500 lncRNA upstream 299319 2715528 ~ 2716915 (+) True G59578
TU74654 lncRNA downstream 11101 3031878 ~ 3034341 (+) True G59700
TU74670 lncRNA downstream 87023 3107800 ~ 3109882 (+) True G59714
TU74671 lncRNA downstream 95741 3116518 ~ 3116819 (+) True G59715
TU74672 lncRNA downstream 96437 3117214 ~ 3117452 (+) True G59716
TU74673 lncRNA downstream 96745 3117522 ~ 3117909 (+) True G59717
AMCG00019926 mRNA upstream 11329 2995864 ~ 3004905 (+) True AMCG00019926
AMCG00019920 mRNA upstream 46639 2962511 ~ 2969595 (+) True AMCG00019920
AMCG00019921 mRNA upstream 97353 2910244 ~ 2918881 (+) True AMCG00019921
AMCG00019915 mRNA upstream 139416 2869705 ~ 2876818 (+) True AMCG00019915
AMCG00019917 mRNA upstream 149270 2852209 ~ 2866964 (+) True AMCG00019917
AMCG00019924 mRNA downstream 3612 3024389 ~ 3031475 (+) True AMCG00019924
AMCG00019930 mRNA downstream 109152 3129929 ~ 3141283 (+) True AMCG00019930
AMCG00019929 mRNA downstream 121670 3142447 ~ 3147034 (+) True AMCG00019929
AMCG00019932 mRNA downstream 128317 3149094 ~ 3157541 (+) True AMCG00019932
AMCG00019931 mRNA downstream 137820 3158597 ~ 3161191 (+) True AMCG00019931
TU74243 other upstream 1938171 1075504 ~ 1078063 (+) False AMCG00019884
TU74166 other upstream 2570704 441598 ~ 445530 (+) True G59305
TU74774 other downstream 220662 3241439 ~ 3250062 (+) False AMCG00019934
TU75012 other downstream 1803036 4823813 ~ 4835797 (+) False AMCG00019967
TU75242 other downstream 2334995 5355772 ~ 5361863 (+) True G60137
TU75235 other downstream 2337687 5358464 ~ 5359365 (+) True G60132
TU75390 other downstream 3161935 6182712 ~ 6186084 (+) False AMCG00020000

Expression Profile