RNA id: AMCG00019931


Basic Information

Item Value
RNA id AMCG00019931
length 939
RNA type mRNA
GC content 0.63
exon number 4
gene id AMCG00019931
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 3158597 ~ 3161191 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCACCGCATCGTGCGGTCGAGGTGGGCTGTGGGCGCCGTGTCCTTGGCTGCTGGGGCGGCCATCGGCGCCTCGTTGATGGCGGCGAGTCCGGAGAGGCAGCAGAGCCAAGGGCAGCTGCCCGGCGTCCTCCGCCGAGCTCCGGTCATCCCCATCCCCAGCGTGGCCGCCGCCGCAGACCTCGCCCGCTACCAGGCGGATCAGGTCGGCACATCCAGAGCCACGGCCATCATGAAGTACGGCTTCCCGTCCCTGTCCAACATCAAGGCCCGGGAGTCCTACGTGGTTTGCTACGAGCCCAGGACCAGGACGGCGCAGTGGGTGCTGGAGCAGCTGAGCGAGCGGACGCTGAGAGGCGCCGCCGACAGGAGAAACAGCGACTTTAAGGAGGACGACTCGGTGCACGAGTACCACCGGGCCAGCAGCGCGGACTACCGCGGCAGCGGCTTCGACAGGGGCCACCTGGCCGCCGCCGCCAACCACAAGTGGAGCCAGAGGGCGATGGACGAGACCTTCTACCTCAGCAACGTGGCGCCGCAGAATCCGAATTTAAACCAAAATGCCTGGAATAACTTGGAGCAGTACTGCCGGAAACTACCTCAGCACTATGACAATGTGTTCGTGTGCACGGGGCCCCTGTACCTGCCCAGACAGGAGCCGGATGGGAAGATGTATGTGAAATACCAAGTTCTGGGGAAAAACCATGTGGCCGTCCCCACGCACTTCTTCAAGGTGGTCATTCTGGAGAACCGGAGGGGGGAGGTGGAGCTGCGGCCGTACCTGATGCCCAACGCACCCGTGAGCGAGAAGATGCCCCTGGAATCGTTCCTGGTCCCCATCGAGAGCATCGAACGAGCCTCCGGCCTGCTCTTCGCCTGGGAAAGTCTTGAGAACAAATCCACCTCTGATCGGTCGTTCTGGACACGCTGGCTGGAGTAG

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K01173 ENDOG; endonuclease G, mitochondrial

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74674 lncRNA upstream 38408 3119812 ~ 3120189 (+) True G59718
TU74673 lncRNA upstream 40688 3117522 ~ 3117909 (+) True G59717
TU74672 lncRNA upstream 41145 3117214 ~ 3117452 (+) True G59716
TU74671 lncRNA upstream 41778 3116518 ~ 3116819 (+) True G59715
TU74670 lncRNA upstream 48715 3107800 ~ 3109882 (+) True G59714
TU74715 lncRNA downstream 38431 3199622 ~ 3200478 (+) True G59746
TU74799 lncRNA downstream 318589 3479780 ~ 3480109 (+) True G59800
TU74831 lncRNA downstream 487138 3648329 ~ 3651107 (+) True G59821
TU74848 lncRNA downstream 527609 3688800 ~ 3689000 (+) True G59835
TU74849 lncRNA downstream 529644 3690835 ~ 3691175 (+) True G59836
AMCG00019932 mRNA upstream 1056 3149094 ~ 3157541 (+) True AMCG00019932
AMCG00019929 mRNA upstream 11563 3142447 ~ 3147034 (+) True AMCG00019929
AMCG00019930 mRNA upstream 17314 3129929 ~ 3141283 (+) True AMCG00019930
AMCG00019924 mRNA upstream 127122 3024389 ~ 3031475 (+) True AMCG00019924
AMCG00019925 mRNA upstream 137820 3016234 ~ 3020777 (+) True AMCG00019925
AMCG00019935 mRNA downstream 32596 3193787 ~ 3196215 (+) True AMCG00019935
AMCG00019937 mRNA downstream 40795 3201986 ~ 3207356 (+) True AMCG00019937
AMCG00019936 mRNA downstream 50066 3211257 ~ 3234415 (+) True AMCG00019936
AMCG00019934 mRNA downstream 80117 3241308 ~ 3251407 (+) True AMCG00019934
AMCG00019948 mRNA downstream 421882 3583073 ~ 3598555 (+) True AMCG00019948
TU74243 other upstream 2080534 1075504 ~ 1078063 (+) False AMCG00019884
TU74166 other upstream 2713067 441598 ~ 445530 (+) True G59305
TU74774 other downstream 80248 3241439 ~ 3250062 (+) False AMCG00019934
TU75012 other downstream 1662622 4823813 ~ 4835797 (+) False AMCG00019967
TU75242 other downstream 2194581 5355772 ~ 5361863 (+) True G60137
TU75235 other downstream 2197273 5358464 ~ 5359365 (+) True G60132
TU75390 other downstream 3021521 6182712 ~ 6186084 (+) False AMCG00020000

Expression Profile