RNA id: AMCG00019934


Basic Information

Item Value
RNA id AMCG00019934
length 4606
RNA type mRNA
GC content 0.43
exon number 3
gene id AMCG00019934
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 3241308 ~ 3251407 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCTTGATCAATTGTAGCATATTTCATATATCATAAGCACTAACACACTGGGGCTTCTGGTTATTCTAGTGCTATTGCTCGGAGCACAAACAGACCTGGTTTCCTCCGGGCACGGAGGGGTTAAGGCTCTCCAGTGAAAGTTGCACAGCTTTTGTGTGTCAAATGTGCGTGTCAATGTAGCCAGCGGTGCAGTTCTGGAAACGTTTGCTGTAACACGACGCAGACGGACAAAAGCCCAACATGCTGGACAACGAGGTTTTCGCGTCGTTTGTGTTTTATAGCGCCCTTCTGGTGCTCAAAATGTACATCGTGGCCATTATCACTGGACAAGTCCGACTCCGCAAAAAGGCGTTTGCTAACCCGGAGGACGCGCTGCGGCACGGAGGAGCGCAGCTCTGCAGACAGGACCCAGATGTGGAGAGATGCAGGAGgtGTCACCAAAATGACATGGAGAACATTTTCCCATTCCTGTTCCTGGGAGCGGTTTACTCCCTGACGGAGCCGACCTTGCTCACAGCCCGACTGCACTTCCAGGTGTTCTTTGTAGGCCGTTTGGTCCACACTGTCGCCTACCTGTGTGCCCTGAAGGCCCCCACCCGCTCCGTGGCCTACAGCCTTGCTCAGGTGCCCTGCTTCTCCATGGCAGTGCAGGTCCTCTTTGCTGTGGCGTCCCACTGGTGAAACCCATCGAGCTGGAGGATTCAAACCATCCACCTCATATTAGAGCAGAGCCTTCCAGAGTCAAAAAGCCACCAATAGAGAACAGTAACTAGCAtcgcatttatgtattttatacttcGAAATCTCCTTAGTTTAGGGAAAAACTAAGAAACACAATCTATTAAGATTAGACTAGATTTTCAGGATCAGTTAAAAGACACGTTgacattttgtgtatttgtttttttagcaaGAGCCAGTGTGTGAAGAGCACCCCAGAGGAAGACAGAGGTAGTACTCTATAGCTTTTCACTGTAAAGTTTGTTCGTGCTTTATATAGAGGGCCAGGCCTGGTTTTATGGCAAAGAAATTACTACAAAACTGGCATTTTGTACTTATAATAATAGATAGATCTGAGGTGTGTGAATTCATCAGTGTCTTGTCACTATTTATGAGGACAGCACTCAACGGATTGCCATGTCAACCCTTTAAAACTTATAATCCAACAGGTATCACTTGATGGAAGCAAAGCCTCCCAAAATTGAACGTTTGTCACGATTAGAACAATGTAATGGATTCGACACCTGCAGTctttaaatattgcttttacTGATTTCAGTTATACTGTAAGCAAGTTTTCTTGATCCATAGCCTCAGAAATATGGCACCCAGGCCTTTAGAAAGCTATTTGCACTCCAGGCAACTGTTTTAACCAAAAGCTGTGTACTTCTACGCAGCTCTTGTTTTCCAAATGTCGTTTCAGAATGTcatcatgaatacattttggtgTAAAGCCGATGTTTACCTAATTTCTTTGGCTCTCTTATAAGGCATTCCTACACGTTTCAACTAGTCTGTTTAGAGCAGTGATCTCCAGCCATGCACCACCAGTCAGTTTTATAGGTCCCCCGCAAATCACCAAACCCTGTCCATCTGTGTCTTTTCACAATGCTGGCCTCACAGCCCACATGAGAGGTTCAGTGCCAATTGGAGGGGCGGTGTGTCCCTTCCAGCAGTTCTGAAAGCCTGCAGGCAACACTCGTTGGCAGTGAGGCAAGATCAGCCCTGCTGATTTAACCCACCCCAGCCCAGCCCTGGTGGCACTGAGCTCTCACGGCCACGGTCAACTAATGATATGAGCTGGGATCGAACCGGCAAATCTCAGCTCATAGTGCCCAATGTGGGCAAGAGCCACTCGGGAGTCCCAGGGACACCATTTGTGATCAGTCCAAGGGTGCTCTTATTCTGGGGGACTGATGAGTATTCAGCTGCCTTAATGGACCTCGAAAATTGCTGAATTTACCACAACACCTGCGCAACTGATCTTGTGTCCAAATCTTTAAACACTGGTGAGGTGAAGGCCAAACAAGTACACGCCCCATTAAAAGCTCCTGGACTGGACTGCTTTAGAGGGGAGttttttagatgtttatttgggTCTCTGCCTttggaaaatataataagacCACATTCCAGCATTTATATGCGTTTGAAGTTCAGATCAGATTGTGCTTATTGTGTGTCCGCAGTTCTGGATATTGCTGAAGTGGGACTGGTGTCATATtgttagtttgttcattatagAGTTCAGTGAGGCCTGTAGATGTAATCTCTTCCGCCAGCAGGCCTTGCTCAGTCCAGCGTGCCGAGCGCACAGAAAGATCCCCGCATTCTTGGCTCGGGGTTATGTAAACTCTTCCCTTGGGTCTTTTCCAGCCCATCTGCAGAGGCCAAACTGGAAGaggtaatgtttattttgttttcggCGTCCGCAAGAAAGGGTGGTGCTGCTGCAACTCAGGTTTATGCCGTAAAAACagctaaaaacaacaaaatgagagctaaaccttttttaatgaataataatgtaaacaaatgacAACAGGTAGCATATTATAAAACCAAAATTGGATCAATCGGTTTCACTGTGgagaaattaaattttaaaactaTTCTGGACCTATTTTGTGAGGGTGATGATTATCTCGCTGTGCCCaggaagtgaaaaataaaatatgtgttgAACAGTACTAACAAATCATAATTTTCTTGGTTTTGGTAAGTGCTTTGTAAGgtttttatgttatattttatgtGGGCATCAGTGAGTGAAGGACAATTCAAAGATCGTCTGTGCTTTCATTTGTTTCCCCTTTAAAGGTTTGGTTTATCTGGGCCTTAGAGAGTTAATGTAACATGATACTGCTTGACAGTGGCAAAGGAAAATGAATACGAACTGTGACCATTAGTGCGTTTGTTGGAAGCAGTGTTCATGTGGAAACATGACTTGCGACTTGGTCATCGAAACCATTGAATGTATTCAAACTTCGTGAACTAATCATCACTGTGTCATCCACGCGaaagtgtttatatatgaaTTTTCATTTGCCACTGGAGGTTTGTGATTTCCAAAACGGAGACTACTGGTCAGACCTACATTCCCGAGGGGCTTGCTGATCGAATGTCAAGTGTTCCTGCCTCATTAGAACTGTTTCATCACGCAGGGGGGCTTGGCCCACTGCTCTCTGTGGTGGACTTTATAACAACACAGCAAGGCCTTGTGCGTCAATGTGAAATATACAAGGAAAAGTGGTTTGTCTATGTAAGCATTGTAAACAGAATGATTAATAAAGATCCAGATGTGCCTTGGAATGTACTCTGCAGGTCAATTGTGACTGTTGagcgccctctgctggtcaCAGGTTTCCCAGCAAAGTTCCCAGTTCCTTGAATGGCCACTGTATCTTCTGGTTTTTGGTCCAACCCAAGCTCTAAATGACTTAAAGATCAGTTAGCCATTATAGgagattatttaaatatctctTTAACtttgcgtttgtttgtttttgttccttgaTTCAAGGCATGCTACCTGTAACATAATTTGCATCCTGTATagagaattatttaatttccccaCTTATGTGGTTAATCAGAGCAGGAACGTTTCTGGGAGATAGGTTGGACCAGAAGCCAGGAGACACTGAGACCCATGTGATACAGCAGGTATGGTGTTCCCCAGTGAGGGCTTTTTACCACATGATGGCAACAGTGTAGAGAAATAAGACCTCAACCTCCTTATGGGCTGAAAGGTGGAGTTATGTAGTTCTGCTGCCACCTAGTGGGACACAGgcaatataatttattcattaaaccctaaacttaattaaatgctAAGAAAATGCAGTCAAGAACTGTATTTAACTtctaaatctctctctctcatacacacaacAATGTAATAGTGCTCTGTTGCTATTTCTAGACTCTtcttaaataaatgcagtgcGGTAGTACAAGTTTATATTCGTGCCCTTACACCTTAATTGTTTTAGGCAGAATGTAAATGACTGTGTCAGCATGCTGGGGAGGGGGCTGGACATTTGCGATGGTAATGTAGAGTGAATAGCCTTATTATTTGCAAACGAACCATACATTTCTTGTGCGTGTCTCAGTAGGAGTAGAAAGTTTCTCttcttgttttctgttacaCTACATGACACACAAAATTGAGCTTTGGTAGTAAGTCAGTGGTGTCAAGACAGAGGGCTCTTGTCGAAagtgtttttacaatatttatattcttaGTCCAGGAATGTTCACAAAGGGAAAGATGGCAGAACACTAATAAGTTATGTAGTTAAATGGCCTCTATACCAGTGTTTTACTTAAGCCATTTGTCCTGAAACATTTAAGGAATTcctcaaaataagaaaacatactATACTTACCTTTTGTGTATTGTAACTgtatattatgtttaatgtcTGTGTTCTAATTGTCTATGGAGGGGGAGTGAAGCCAAGAGTACAACTTTACAACCAAGAGACTCTTATAATAgctcaataaaacaaaagggtAATTAACTtaacaaatattaattcaaaactGTGAGTTGACATTTTCTCAgaaattgctgttttttctgACTCCAAATGAACTCCTG

Function

GO: NA

KEGG:

id description
K15729 PTGES; microsomal prostaglandin-E synthase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74715 lncRNA upstream 40830 3199622 ~ 3200478 (+) True G59746
TU74674 lncRNA upstream 121119 3119812 ~ 3120189 (+) True G59718
TU74673 lncRNA upstream 123399 3117522 ~ 3117909 (+) True G59717
TU74672 lncRNA upstream 123856 3117214 ~ 3117452 (+) True G59716
TU74671 lncRNA upstream 124489 3116518 ~ 3116819 (+) True G59715
TU74799 lncRNA downstream 228373 3479780 ~ 3480109 (+) True G59800
TU74831 lncRNA downstream 396922 3648329 ~ 3651107 (+) True G59821
TU74848 lncRNA downstream 437393 3688800 ~ 3689000 (+) True G59835
TU74849 lncRNA downstream 439428 3690835 ~ 3691175 (+) True G59836
TU74850 lncRNA downstream 440338 3691745 ~ 3692036 (+) True G59837
AMCG00019936 mRNA upstream 6893 3211257 ~ 3234415 (+) True AMCG00019936
AMCG00019937 mRNA upstream 33952 3201986 ~ 3207356 (+) True AMCG00019937
AMCG00019935 mRNA upstream 45093 3193787 ~ 3196215 (+) True AMCG00019935
AMCG00019931 mRNA upstream 80117 3158597 ~ 3161191 (+) True AMCG00019931
AMCG00019932 mRNA upstream 83767 3149094 ~ 3157541 (+) True AMCG00019932
AMCG00019948 mRNA downstream 331666 3583073 ~ 3598555 (+) True AMCG00019948
AMCG00019951 mRNA downstream 805088 4056495 ~ 4072047 (+) True AMCG00019951
AMCG00019959 mRNA downstream 1272949 4524356 ~ 4555905 (+) True AMCG00019959
AMCG00019961 mRNA downstream 1307899 4559306 ~ 4587941 (+) True AMCG00019961
AMCG00019958 mRNA downstream 1351888 4603295 ~ 4621533 (+) True AMCG00019958
TU74243 other upstream 2163245 1075504 ~ 1078063 (+) False AMCG00019884
TU74166 other upstream 2795778 441598 ~ 445530 (+) True G59305
TU75012 other downstream 1572406 4823813 ~ 4835797 (+) False AMCG00019967
TU75242 other downstream 2104365 5355772 ~ 5361863 (+) True G60137
TU75235 other downstream 2107057 5358464 ~ 5359365 (+) True G60132
TU75390 other downstream 2931305 6182712 ~ 6186084 (+) False AMCG00020000
TU76237 other downstream 6532710 9784117 ~ 9788052 (+) True AMCG00020105

Expression Profile