RNA id: AMCG00019935


Basic Information

Item Value
RNA id AMCG00019935
length 735
RNA type mRNA
GC content 0.60
exon number 7
gene id AMCG00019935
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 3193787 ~ 3196215 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATCCCCATGTTCTGATCCAGTGTGGGCCGCTGTCTTGGTTTGTATTTTCAGAGACCTTCAGACAGTGCAGCTCGTCTGCTGTCGGTGAACAGAAGGCCGAGGACTCCTTCCTCAAATGGCTCCTGTTGCTGATCCCGGCCACCACCTTCGGCCTGGGGACCTGGCAGGTCCAGCGTCGGAAATGGAAACTGAACCCCATGGAACTGAAGACCCTGGAGTATCGGCGCATGCGTGTGCGCGGGCGCTTCGATCACTCCCGGGAGCTCTACATCCTGCCCCGCTCCCTGGTGGACCCGGAACGAGAGGCCAGGGAGGCTGGCAGACTCGCCTCCAGCGCCGAGACGGGAGCCAATGTGGTCACGCCCTTCTACTGCACAGACCTCGGGGTCACAATCCTGGTAAACAGAGGCTATGTCCCCAGACAGAAGATTGATCCACGGACCAGACAGAAAGGACAGGTGGCGGAGGAGGTGGAGCTGGTTGGAGTGGTGAGGCTGACTGAGGCCCGGAAGCCCTTTGTGCCTCAGAATGACACGGGGAACAACCACTGGCATTACCGGGACCTGGAGGCCATGGCTAAGGCGACTGGGTCCGAGCCCGTTTTTATCGATGCCGACTTCGCCAGTACAGTCCCTGGAGGGCCCATCGGGGGGCAGACTCGAGTCACCCTGAGGAATGAGCACATGCAGTATATTGTCACATGGTACATGCCAGGCCACTGTGAGGCACTTTGA

Function

GO:

id name namespace
GO:0021522 spinal cord motor neuron differentiation biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0048568 embryonic organ development biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016020 membrane cellular_component
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG:

id description
K14998 SURF1, SHY1; surfeit locus 1 family protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74674 lncRNA upstream 73598 3119812 ~ 3120189 (+) True G59718
TU74673 lncRNA upstream 75878 3117522 ~ 3117909 (+) True G59717
TU74672 lncRNA upstream 76335 3117214 ~ 3117452 (+) True G59716
TU74671 lncRNA upstream 76968 3116518 ~ 3116819 (+) True G59715
TU74670 lncRNA upstream 83905 3107800 ~ 3109882 (+) True G59714
TU74715 lncRNA downstream 3407 3199622 ~ 3200478 (+) True G59746
TU74799 lncRNA downstream 283565 3479780 ~ 3480109 (+) True G59800
TU74831 lncRNA downstream 452114 3648329 ~ 3651107 (+) True G59821
TU74848 lncRNA downstream 492585 3688800 ~ 3689000 (+) True G59835
TU74849 lncRNA downstream 494620 3690835 ~ 3691175 (+) True G59836
AMCG00019931 mRNA upstream 32596 3158597 ~ 3161191 (+) True AMCG00019931
AMCG00019932 mRNA upstream 36246 3149094 ~ 3157541 (+) True AMCG00019932
AMCG00019929 mRNA upstream 46753 3142447 ~ 3147034 (+) True AMCG00019929
AMCG00019930 mRNA upstream 52504 3129929 ~ 3141283 (+) True AMCG00019930
AMCG00019924 mRNA upstream 162312 3024389 ~ 3031475 (+) True AMCG00019924
AMCG00019937 mRNA downstream 5771 3201986 ~ 3207356 (+) True AMCG00019937
AMCG00019936 mRNA downstream 15042 3211257 ~ 3234415 (+) True AMCG00019936
AMCG00019934 mRNA downstream 45093 3241308 ~ 3251407 (+) True AMCG00019934
AMCG00019948 mRNA downstream 386858 3583073 ~ 3598555 (+) True AMCG00019948
AMCG00019951 mRNA downstream 860280 4056495 ~ 4072047 (+) True AMCG00019951
TU74243 other upstream 2115724 1075504 ~ 1078063 (+) False AMCG00019884
TU74166 other upstream 2748257 441598 ~ 445530 (+) True G59305
TU74774 other downstream 45224 3241439 ~ 3250062 (+) False AMCG00019934
TU75012 other downstream 1627598 4823813 ~ 4835797 (+) False AMCG00019967
TU75242 other downstream 2159557 5355772 ~ 5361863 (+) True G60137
TU75235 other downstream 2162249 5358464 ~ 5359365 (+) True G60132
TU75390 other downstream 2986497 6182712 ~ 6186084 (+) False AMCG00020000

Expression Profile