RNA id: AMCG00019936


Basic Information

Item Value
RNA id AMCG00019936
length 4029
RNA type mRNA
GC content 0.52
exon number 24
gene id AMCG00019936
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 3211257 ~ 3234415 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGAGAAGCTTCCTAGCGGATGTGACGTCACTATGCGAAGGCGAAACTAAAATTAAGGGGAGATGACGGAAAACAGGGATATTTGTCCTCACCTGGATTCCATCGGTGAAATCACCAAGGAGGACTTACTACAGAAATCCAAGGGAACATGTCAATCTTGTGGGGCAGGCGGGCCAAACCTCTGGGCCTGTCTACAGAAGGACTGTCCCTATGTGGGCTGCGGAGAGTCCTATGCTGATCACAGCACCTTGCATGCGCAGGATGCTGTCCCGCCGGTGGAAAGCCACCCCTTGAAAGCCGTCCCGATCGCAGTGGCGGATGAAGGCGAGTCGGAATCGGAGGAAGATGAACTCAAACCAAGAGGTCTCACCGGGATGAAGAATATAGGGAACTCTTGCTACATGAACGCGGCCCTCCAAGCCCTGTCCAACTGCCCTCCACTCACACAGTTTTTCCTAGAATGCGGCGGGTTGGTCCGGACCGACAAGAAGCCGGCGCTGTGCAAGAGCTACCAGAAGCTCATTTCCGAACTTTGGCATAAGAAACGCCCCAATTACGTCGTCCCCACAAGCCTGTCCCACGGAATCAAGCTGGTGAACCCCATGTTTCGAGGCTATGCGCAGCAGGACACCCAGGAGTTCCTGCGCTGCCTGATGGACCAGCTGCACGAGGAGCTGAAGGAGCCCACTCTTGAGTGCGGGGAGCAGGAAGGCGAGGAGAGGCGCGACGGCGACCGCAGCCCTTCCGAGGACGAGTTCCTGTCCTGCGACTCAGGCTCCAGCAGCGACCGTGGGGAGAGCGGCGGCGGGGGGTGCGAGGGCCGTGGGCCGGGCGAGGCGGAGCTGCTGATCCAGGATGAGTGCGGGGGCCCGGGCCGGGGTAGCATCTCTGAGAAGGAGCGGCTGAAGGAGAGGAGGTTCTCAGCGTCGCCGCGCCGCGCCGGCTCCCAGGAGATGGACGAGGACGCCGACGTGGACACGGCCGCGCAGGACGGGGGGGCGCGGCGGGCCGGGGATGAGGATGGGAGCCCCACCCAGAGCCTGAACCGGAACACAGAGCCGGACAATGAGGCCTCGATGCACTGTAACTCCCGGCCCTGCAGCCCCTCCCACACCCTGCAGGAGATGCACCCCAAACTGTCCAGCAGTCCTCCGCGGTCCAGCCCTCTGCGCTCCGGGGCCTCCTACTCGCTGAAGAAAGCTCAGCTCCTCCTGGGGACCCGGAAGAAGAAACAGCCGCGATATCGCAGCGTCATCTCGGACATCTTCGACGGCTCCATCCTCAGCCTGGTCCAGTGTCTGACCTGCGACAGGGTGTCAACAACTGTGGAGACCTTTCAGGACCTGTCCCTGCCCATCCCTGGGAAGGAGGACCTGGCCAAACTGCATTCCTCCATCCACCAGAGCCTGCCAGCCAAGACAGGCACCTGCTCGGACACCTACGCCTCCCAGGGCTGGATCTCCTACATCATGGACTATATCCGCAGGTTTGTAGTGTCCTGTATCCCCAGCTGGTTTTGGGGTCCCATCGTCACGCTGGAAGACTGCCTGGCTGCCTTCTTTGCTGCCGATGAACTGAAAGGTGACAATATGTACAGTTGTGAACGATGTAAAAAATTAAGAAATGGTGTTAAATATTGTAAGGTCCTTCGTCTACCTGAaATTCTGTGCATTCACCTGAAGCGATTTCGCCATGAAGTCATGTACTCCTTCAAGATCAATAGCCATGTGTCTTTCCCATTGGAGGGCCTTGACCTCCGACCTTTCCTGGCCAAGGAAAGCCCTTCTCAGATCACAACCTATGACCTCCTCTCTGTCATCTGTCACCACGGTACTGCAGGAAGTGGTCACTACATTGCCTACTGCCAGAACGTCATCAATGGCCAGTGGTACGAGTTTGATGACCAGTATGTGACAGAGGTCCACGAGACGGTGGTGCAGAACGCGGAAGCCTACGTGCTCTTCTACAGGAAGAGCAGCGAGGAGTCGGTGCGGGAGAGGCAGAAGGTGGTGGCCCTGGCCAACATGAAGGAGCCCAGCCTGCTGCAGTTCTACATCTCCAGGGAGTGGCTGAACAAGTTCAACACCTTCACTGAGCCGGGGCCCATCAGCAACCACACCTTCCTCTGCCAGCATGGGGGAATCCCACCGAACAAGTACCACTACATTGACGACTTGGTCGTGATCCTGCCGCAGAATGTGTGGGAGTATCTCTATAACAGtttcgGAGGAGGTCCTGCTGTGAACCATCTCTACGTCTGCTCTATATGCCAGGTGGAAATCGAAGCCCTGGCCAAGCGCAGGAAGGTGGAGATTGACACCTTCATCAAGCTCAATAAAGCATTCCAGGCTGAAGAGGCTCCGACCGTCATCTACTGTATCAGTATGCAGTGGTTCAGGGAGTGGGAGAGCTTCGTCAAGGGGAAGGACAATGAGCCGCCTGGGCCTATTGACAACAGCAAGATTGCAGTGATGAAGGGAGGACATGTGCAGCTCAAACAAGGAGCTGATTACGGTCAGATTTCGGAGGAGACGTGGCATTACCTCTTCAATATCTACGGAGGCGGACCTGAGATCGCGGTGCGTCAGACTGTGGCCCAGGCTGACACGGAGAGCTTGCACGGGGAGCGCAAGATCGAGGCAGAGACCAGAGCCATCTGAGGATCGCCAGGACCCAACACAGACCCTgtgGTTTTTTGCTTCATCCTAACCGGAGTGGCACCGACGTTGCACCTTGGCAAATATGTCGTGAGCACTTTTGTGACGTACCAGTATGTCATCTTCTCACAAAGAAAActataatactgataataatgttaataataatattaagagtAGTACTATTTATTGAAGAATCTGTAGTTTAGCCCTCCTGGTCTCACCGCAGTGTTGCAAGGCGACTGCTCAAGTAGAAACAGGATCAACTAGTAACATTGTAATTAAGTCATGTTAGACCAATCACAGATGTTCCAGCTCATGAAGGCTTCAGGGTCAAGCGGCCAGATGGTGCGACTCGGTCTTCGGTGCAGCTCGTCTGCCGGGGCACTTGTTCAGAAACCGTTTGAATCTGCAAGCATGGCACACTGGGCTTCAGCACTGGATGTTTGTCGCGAGTGATCGTCCAAGTGTCAGACGTGACGAGAAGAAATTTGTGAAGATCCACGTTTACTATATTTACAGCACCCCACTCCCCAACCCCGACTGTAGCTTCGTGAGCTTTGTGATGCATTTCCCATGCTATCATGTCTGCAATAACTGATAGGCAAACACTGTTGATTGGGACTGATTGTAGTGGCTTCAGAATAGAGAGGCTCGAGTGTCTGTAGATTTGTTtcacacaatattttatattatagcaCAATCTCTTCTCTGACTTCTGCCCGGCCACCCTAtagacatatatacatatatgtgtccCATGCAATCTGTAAAACCAAAGAGCGCATATAGAGTTTCCGTTCCtcaagatgtggcaacgccttcCTTGGCCCCCCACTGCCATCCGGTCTTCGATAACCGTGGCTGGCTGGCATTGCTATGACTGCTACCAAGAGATAGTGATCAGGCGTCAGGAAAAGCCCGGCAAAGAAATGTCATTTCAGTCTGTAGTCTGGTTATATCAGATTCATTTCTTGGAGTAGCGACTGTAAGAACCAGCAGGATTGTGTTACTTGTTATTGGAACCATACACTTCGGACTGCACTTACAGCCTTGTTAATTGTGTAAAGTATTAATATtgtctctaaattatttatatatatatatatttacatatatataaatgtgaataGATCTATTATTCATACCGTTAGTGTTACAGGTATGAAGAACAAAATGCTCTTACTGTGGTTTTGATGTCATGCTTCTCATCTCTGATATGAAATCAGGAATGCTGAGGGGTGGAAACAGATTCCTGGGCTCAGTGTTTGTAGCTACGTGAAGAATAAAACATCTGTTACACTCATGCCACGCACAGATAAACACTACGCAGTTTGATCTGAGACATCTTTTCTTGATGTACTGAATAAAC

Function

GO:

id name namespace
GO:0021551 central nervous system morphogenesis biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11848 USP20_33; ubiquitin carboxyl-terminal hydrolase 20/33

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74715 lncRNA upstream 10779 3199622 ~ 3200478 (+) True G59746
TU74674 lncRNA upstream 91068 3119812 ~ 3120189 (+) True G59718
TU74673 lncRNA upstream 93348 3117522 ~ 3117909 (+) True G59717
TU74672 lncRNA upstream 93805 3117214 ~ 3117452 (+) True G59716
TU74671 lncRNA upstream 94438 3116518 ~ 3116819 (+) True G59715
TU74799 lncRNA downstream 245365 3479780 ~ 3480109 (+) True G59800
TU74831 lncRNA downstream 413914 3648329 ~ 3651107 (+) True G59821
TU74848 lncRNA downstream 454385 3688800 ~ 3689000 (+) True G59835
TU74849 lncRNA downstream 456420 3690835 ~ 3691175 (+) True G59836
TU74850 lncRNA downstream 457330 3691745 ~ 3692036 (+) True G59837
AMCG00019937 mRNA upstream 3901 3201986 ~ 3207356 (+) True AMCG00019937
AMCG00019935 mRNA upstream 15042 3193787 ~ 3196215 (+) True AMCG00019935
AMCG00019931 mRNA upstream 50066 3158597 ~ 3161191 (+) True AMCG00019931
AMCG00019932 mRNA upstream 53716 3149094 ~ 3157541 (+) True AMCG00019932
AMCG00019929 mRNA upstream 64223 3142447 ~ 3147034 (+) True AMCG00019929
AMCG00019934 mRNA downstream 6893 3241308 ~ 3251407 (+) True AMCG00019934
AMCG00019948 mRNA downstream 348658 3583073 ~ 3598555 (+) True AMCG00019948
AMCG00019951 mRNA downstream 822080 4056495 ~ 4072047 (+) True AMCG00019951
AMCG00019959 mRNA downstream 1289941 4524356 ~ 4555905 (+) True AMCG00019959
AMCG00019961 mRNA downstream 1324891 4559306 ~ 4587941 (+) True AMCG00019961
TU74243 other upstream 2133194 1075504 ~ 1078063 (+) False AMCG00019884
TU74166 other upstream 2765727 441598 ~ 445530 (+) True G59305
TU74774 other downstream 7024 3241439 ~ 3250062 (+) False AMCG00019934
TU75012 other downstream 1589398 4823813 ~ 4835797 (+) False AMCG00019967
TU75242 other downstream 2121357 5355772 ~ 5361863 (+) True G60137
TU75235 other downstream 2124049 5358464 ~ 5359365 (+) True G60132
TU75390 other downstream 2948297 6182712 ~ 6186084 (+) False AMCG00020000

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00059097 True 4996 mRNA 0.44 24 NC_007116.7 33301005 ~ 33330923 (+)