RNA id: AMCG00019937


Basic Information

Item Value
RNA id AMCG00019937
length 1595
RNA type mRNA
GC content 0.48
exon number 5
gene id AMCG00019937
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 3201986 ~ 3207356 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGTTAGGCTGTGCTGCATCACGTCTTGTGGAGTCTGGCCGACATGAATTAGCGGGAAGAAGCtacaagAGAAGGAGCTTCATTACCGACCAGATGTCGACGCAGCGAGTCCTTCCTCAGAGCAAAGAGACGCTCCTGCAGTCCTACAACAAAAGACTGAAAGATGACATCCGATCCATCCTGGACAACTTCACAGAGATCATAAAGACGGCCAAGGTGGAAGATGAAACTCAGGTGTCCAGAGCGACTCAAGGAGAGCAGGACCACTATGAGATGCACGTCAGAGCAGCCAATATTGTGCGCGCCGGGGAGTCCCTGATGAAGCTGATCTCGGACCTCAAACAGTTCCTGATCCTCAACGACTTCCCGTCTGTGAACGAAGCCATCAACCAGCGGAACCAGCAGCTGCGCTCGCTGCAGGAGGAGTGCGATAAGAAACTGACCTCCCTGCGCGATGAGATTGCAATTGACCTGTACGAGCTAGAGGAAGAATATTACTCCTCCAGCTACAGTCACTGGGACAGCAGCGACCTGCCCCTGTGCGAGGCCTTCCGGCGGCAGGACAACCTGGTCTCCCCGGGGGGGGCTTCGGCGTCCTCAGGATCCGGGGTCACGGGCAGAGCCGAGGATGGAGGGGGAGCGGCGTCCCAGGGATCCACTCCGGGCCACCTGAACGGACACTCGGTGGGCCCCTCGGAGCACCAGTGACGGAGCGCCACCGACCGGGTGCGCCGGGGTCACGGCTGCGGACTCGAGCCACCTCTCGGATTTCCACGCCCAACTGGAACTCGTTTCGTGGAGTTCGTCATATAGCTGGGCTTCTcgatttagtctttgttttttaattttttgttaaGATGAACAGTAGCTGGGTTCCCATTCACAGGGATGGGACCGCGCTGGTCTGAGCCTAGCGTTTTGAGCCATGAGGGAGGGTCTTGCGTTTGGAAATACATGTACCgaggtttgtttttctggatCTTTGGTTGTATGTGTCGTGTAAGACGGACTGCGGTTTAGCCTCTGTGTTGAAGCAGAACAGTGGTGCTTCAGAGATGGGCGAGGCCTGTATAGATGTATAGGAGGCGGAGTTACAGAAAGATGAGTAGCAGGACTAGGGCAACAGAAGGACATGTAGCCTAGGACAGGGCAATAGTCAAAGACGAGCtgaagtttgtgtttttattaacacaTGGATTAACAATCTCAGGTCAATCGTGagctctttttttattttattaaaaagcttttgttGAGCACAGTATACACTGACAGATACAttgcatttgttaatttatgtactactactgtaatgtaatatttagaTACTACATATGGACAGCTATGAAACGTATTTTGATGTGACTATTGGGGGACCCAAACCTATAACAATTAATCAGTATTAAATAGCAAATGCAGTAAGAGTCCTTTGAGAGAAAAAGGATGATATGGTTTTGTATTGTAGTTAGTCAAACACTgaaaattgtttcaaattaactgtgcagtgtttatttttactgattgttttttatgtgtattgATTTTCAAACTAGAATAAGcttgagttaaaaataaataaatccttcaaTGAAATA

Function

GO: NA

KEGG:

id description
K15139 MED22; mediator of RNA polymerase II transcription subunit 22

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74715 lncRNA upstream 1508 3199622 ~ 3200478 (+) True G59746
TU74674 lncRNA upstream 81797 3119812 ~ 3120189 (+) True G59718
TU74673 lncRNA upstream 84077 3117522 ~ 3117909 (+) True G59717
TU74672 lncRNA upstream 84534 3117214 ~ 3117452 (+) True G59716
TU74671 lncRNA upstream 85167 3116518 ~ 3116819 (+) True G59715
TU74799 lncRNA downstream 272424 3479780 ~ 3480109 (+) True G59800
TU74831 lncRNA downstream 440973 3648329 ~ 3651107 (+) True G59821
TU74848 lncRNA downstream 481444 3688800 ~ 3689000 (+) True G59835
TU74849 lncRNA downstream 483479 3690835 ~ 3691175 (+) True G59836
TU74850 lncRNA downstream 484389 3691745 ~ 3692036 (+) True G59837
AMCG00019935 mRNA upstream 5771 3193787 ~ 3196215 (+) True AMCG00019935
AMCG00019931 mRNA upstream 40795 3158597 ~ 3161191 (+) True AMCG00019931
AMCG00019932 mRNA upstream 44445 3149094 ~ 3157541 (+) True AMCG00019932
AMCG00019929 mRNA upstream 54952 3142447 ~ 3147034 (+) True AMCG00019929
AMCG00019930 mRNA upstream 60703 3129929 ~ 3141283 (+) True AMCG00019930
AMCG00019936 mRNA downstream 3901 3211257 ~ 3234415 (+) True AMCG00019936
AMCG00019934 mRNA downstream 33952 3241308 ~ 3251407 (+) True AMCG00019934
AMCG00019948 mRNA downstream 375717 3583073 ~ 3598555 (+) True AMCG00019948
AMCG00019951 mRNA downstream 849139 4056495 ~ 4072047 (+) True AMCG00019951
AMCG00019959 mRNA downstream 1317000 4524356 ~ 4555905 (+) True AMCG00019959
TU74243 other upstream 2123923 1075504 ~ 1078063 (+) False AMCG00019884
TU74166 other upstream 2756456 441598 ~ 445530 (+) True G59305
TU74774 other downstream 34083 3241439 ~ 3250062 (+) False AMCG00019934
TU75012 other downstream 1616457 4823813 ~ 4835797 (+) False AMCG00019967
TU75242 other downstream 2148416 5355772 ~ 5361863 (+) True G60137
TU75235 other downstream 2151108 5358464 ~ 5359365 (+) True G60132
TU75390 other downstream 2975356 6182712 ~ 6186084 (+) False AMCG00020000

Expression Profile