RNA id: AMCG00019948


Basic Information

Item Value
RNA id AMCG00019948
length 1836
RNA type mRNA
GC content 0.58
exon number 7
gene id AMCG00019948
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 3583073 ~ 3598555 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACACCCTGGACACCCTGGACACCCTGGACTCTGCCGGCCTGGATCCCCAACTCGCTGTCAGCAGCTCCGTAGCTGGCCGGCTGGCGCTGCACACACACGGGTACAGTGTCCACAGAAAGGGGCGACGCGCGGAGAGGTCGCTGTTGATGCCGGGCGTTTCTCACGCCGTGTGCTGTGCGCGGAGGCTGTACTACAGCATGAGCGGCCGGGATGGCAAAGTTAAAGCGCAGCTCCAGCACATGAGACCCGCCGGCGAGCGGCCCGAGAGGGAGGCGGCGCTGGAGGAGCTGGCACTGGTGTCGGCATCCCCGCCGGGATCCCTCGCCCCTGCCGCAGGGAGGAGGGAGGCCAGGAGCGCCCTGAGCACCACCGGCGGCATCGGCAGCAGCAGGGCGAGGAGCAAGAGCCGGAGCAAACGCCTGGACGGCAAAGAGGAGACCCCGGGAGCCGAGCCTGCCCCGATGGAGACCCCGGCCAGgaagctgctgctgcagaaCCGGGGCAGCACCGAGACGGGGCTGCAAATCACAGGCACCGGGAAGATCCTACAAGGGAAAGCCGAGAGCAACGGCACGGCCGGGGCCAGGGAGGGGAGAGGCCAGCAGGGCAGGGAGGACGGCAACCGGGCGTCCAAGAAGAGGAAGCCCGTCTCCGTGGACAGCTCGAAGGCGAAGACCTCCCTGGAGGCGCTGAAAGTCAGTATCCGACAACTCAAGTGGAAAGAGtttccCATCGGCCGCCGTGTCGCCTGCGATATATACTGGCATGGTGTGTCTTTCCATGACAATGAAAACATCTTCTCAGGCCAAGTCAACAAATTCCCAGGTACAGTATACTACCCTCACGAGGACGTAGACAATCATGGCAGGAGAGGAAACAGGCTGCTGTACACTGCTGCGTATtGCATGATAGAGATGCTACGCAAAATAAACCTGAGTCGAGCGGTGCGCACAATGCAGGAGCTGTTTCCAGAAGAATACAACTTCTACCCTCGCTCGTGGATCCTGCCCGAGGAGTACCAGCTTTTCTCAACTCAGGTCCGCGTGGCGAAAGACAAGGATGCCTCCTGGAAACCAACGTTCATTGTGAAGCCTGACGGAGGGTCCCAGGGCGATGGCATCTACCTCATTCGTGACCCCAGTGACATCCGGGTAGTGGGCAGCACCCAGTGCAAGAACGCCGTGGTGCAGGAGTACATCCAGAAGCCTCTGCTCATTGACAAGCTCAAGTTCGACATCCGCCTGTATGTCCTGGTCAAGTCCCTGGAGCCACTGGAGATCTACATCGCCAAAGAGGGGCTCTCCAGGTTCTGCACCGAGGCCTACCAGGAGCCCAGCCAAAAGAACTTGAACCACGTCTTCATGCACCTGACCAACTACTCCTTAAACGTCCACAGTGACAACTTTGTCCATTCAGACAGCACCAACACGGGCAGCAAGAGGACCTTCTCCAGCATCCTGTACCGCCTGGCCTCCAAAGGCGTAGACATCAAAAAGGTGTGGTCAGACATCATCTCCCTGGTCATTAAGACTGTTATAGCCTTGGTGCCTGAGCTCAAGGTCTACTATCAGGCCGACATCCCACCAGGGAAACCTGGACCAACGTGCTTTCAGATTTTAGGGTTTGACATTCTCCTGATGAAGAACTTGAAGCCCATATTACTGGAGGTCAATGCAAATCCCAGCATGAGAATTGAACATGAGCAGGAGGTGTCTCCGGGCGTGTTTGAGTATGTCCCTAGTCCAGTTGATGAAGAGGTGAAAGTTGGAGTTATCCGCGACACATTACGACTGGTGGACCCTGGGCAGAGGAAACTCACCAACCACCAGTAA

Function

GO: NA

KEGG:

id description
K16604 TTLL11; tubulin polyglutamylase TTLL11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74799 lncRNA upstream 102964 3479780 ~ 3480109 (+) True G59800
TU74715 lncRNA upstream 382595 3199622 ~ 3200478 (+) True G59746
TU74674 lncRNA upstream 462884 3119812 ~ 3120189 (+) True G59718
TU74673 lncRNA upstream 465164 3117522 ~ 3117909 (+) True G59717
TU74672 lncRNA upstream 465621 3117214 ~ 3117452 (+) True G59716
TU74831 lncRNA downstream 49774 3648329 ~ 3651107 (+) True G59821
TU74848 lncRNA downstream 90245 3688800 ~ 3689000 (+) True G59835
TU74849 lncRNA downstream 92280 3690835 ~ 3691175 (+) True G59836
TU74850 lncRNA downstream 93190 3691745 ~ 3692036 (+) True G59837
TU74851 lncRNA downstream 94502 3693057 ~ 3693459 (+) True G59838
AMCG00019934 mRNA upstream 331666 3241308 ~ 3251407 (+) True AMCG00019934
AMCG00019936 mRNA upstream 348658 3211257 ~ 3234415 (+) True AMCG00019936
AMCG00019937 mRNA upstream 375717 3201986 ~ 3207356 (+) True AMCG00019937
AMCG00019935 mRNA upstream 386858 3193787 ~ 3196215 (+) True AMCG00019935
AMCG00019931 mRNA upstream 421882 3158597 ~ 3161191 (+) True AMCG00019931
AMCG00019951 mRNA downstream 457940 4056495 ~ 4072047 (+) True AMCG00019951
AMCG00019959 mRNA downstream 925801 4524356 ~ 4555905 (+) True AMCG00019959
AMCG00019961 mRNA downstream 960751 4559306 ~ 4587941 (+) True AMCG00019961
AMCG00019958 mRNA downstream 1004740 4603295 ~ 4621533 (+) True AMCG00019958
AMCG00019957 mRNA downstream 1032486 4631041 ~ 4650566 (+) True AMCG00019957
TU74774 other upstream 333011 3241439 ~ 3250062 (+) False AMCG00019934
TU74243 other upstream 2505010 1075504 ~ 1078063 (+) False AMCG00019884
TU74166 other upstream 3137543 441598 ~ 445530 (+) True G59305
TU75012 other downstream 1225258 4823813 ~ 4835797 (+) False AMCG00019967
TU75242 other downstream 1757217 5355772 ~ 5361863 (+) True G60137
TU75235 other downstream 1759909 5358464 ~ 5359365 (+) True G60132
TU75390 other downstream 2584157 6182712 ~ 6186084 (+) False AMCG00020000
TU76237 other downstream 6185562 9784117 ~ 9788052 (+) True AMCG00020105

Expression Profile