RNA id: AMCG00019951


Basic Information

Item Value
RNA id AMCG00019951
length 5043
RNA type mRNA
GC content 0.56
exon number 28
gene id AMCG00019951
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 4056495 ~ 4072047 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTACAAGGAAGGTTTTCCCGAAAGAGGTGTGTTTacgaaaaaaaaagtttgattggACTTGGGATCTCATACCAATGTGTTTCAAACAAAATTACGATTTGCAACATGATGCGTGTGGATGGACTTACTTATTTTGGTCTACAATTAGTTTCGATGAAGATGAAGATTCCAGTACATCTTGGCGCCATGGTGACCATGCCCTCTATCACGCAGAGTATGCACTTCGGCTCCATCAAGTGCGGGCTGTGCAAGGTCGTGACCATCCAGCTGCAAAATCACCAACAGGTGCCCTGTAAATGGGCCCTCAGCAAACCAGAGAAACCAAAGATGGACAAACACGCCCCCCTCCATGTAAAACAGAGGATCTGGCAGGAGTACCAGAACACCCCCCAGATCTTCAAAATGCTGCCCACTGCGGGAGTGCTGCAGCCTGGGGAGAAGGCAAATGTGCAGGTCAAATTCAGTCCCACAGAGGAAaaaatgtacagcCAGCGCCTGGTCCTCTGCATTGCCCACAGCACCCAGCGGGTGACGATTCTGGCCGAGGGCCAAGGGAAAGAGCCCCGGCTGGagttctcctcctctctgctgAAGCTGGGGCCCGTGCTGCCCCACAGTGCCGGAGGCGAGGCCGAGGTTGTGGTCAGGAACCCCTGCGCCTTCCCCATCGAGTTCTACTGCCTGGAGTTTGATCAGCAGTACCTTGAAGAGGAAAAGATTCTGCAGATGATGGAAGGGTATGATTCTGAGAACGTGCTGCTGTTGCCCCCCCGGGACCCAGGAGAGAAGCTCCCCCCTGAACTCCTGGAATACTACGAGGAGCAGAGGGGCGCCCAGGAAGAGAGCAGCAGGCTGGAGGAAGAGCCGAGCACAGAGGGAGCCGAGAGGGAGAGCAGCGCTGGGGTGGGCAAGCCGGAGGTCAGTCCTGTGTCCAGGGCCGTCGCCAGGCACATGGGCATCGACCTGTCCCTGGAGGGCCAGGCTGCGTTGAACTGCAGGGGCATCGCCATCATCGTGCACGGGGCGCCACTCACAGAGGAACATTATGGTGCCGCCTGTCTGAGCATCGATGCCGTGGTGCTGGAGGCCGTGTCCAGTGGCAGCAGTGAGGCCAGCCTGCAGGCCAGGGAGCTGTGTGACCGGGCTGCCGAGGAGCAGACACAGAGCCCAGATGATGGGTTGCCCGTGAGCTGTGTGCTGCCCGATGAGCTGCTGGTGGACATCCTGAGTGAGAGGCTACAGcTGAGTGACTGTCACCGAGGGGTTGTGTTCGATGGCTTGGAGACCCTttactctcactctctgtccAGCGCGCTCCAGGCCCTCCTCAAAGCTTTCAACAACCGTCAATACATCTACCTGGTTGACCTCAACCAGGACTACAGAGCGTTGAAAGCCAGGGAGCAGGCACAGATGGACGAGGAGGAGCGCCTGCGGAAGGAGAGCCTGAAGAGGGACTTGGCTTGGATGCAGGAGATGGATCAGGAGGAGTACGACGCTCTGTCAAAGGAAGAGAGGGAACGCAGCGACCTCTGGTGCCTGGAGGAGCGGAGAAAGCGCAAGCGCAGGAAGCAGGATAAATGGGCGccgaaggaggagaagaagatgCAGAAGGTGAAGcaggagaagaagagagaggaaggggagaggaggaagaagagtcATGTTGGTGGGAAGCAGCACAAAGAACACCCAGAAACACACCCACGTGCAGTAACCCACAACCACGAGGACGACAAGAACGCAAAGGTGGACATCTCTCCCACCCCGGTCCCcgagcagctggaggaggagcaggtCAGTGAGGCCGagaagctgctgcagctgcGCTTCCATCAGTACAAGCAGAGCCAGGCGGCGGTGGCCCAGATCCTGCTCTACTGGGATCACGTGCAGGGCCAGGTGGTCCAGGATGTGACTGCGAAGGAGACGCATCCGGAGGCCCAGGAGGTGGCCGTGCGGCCAGAGAAGAGGGTCCGGAGGAAGAATAAGGAGAAGGAGCGGCTGGAGCAAGAGAAGTTTGAGCTGATGCTCTCGCCAGCCCCCAGTCAGACGGTGGCCATGGATGAGGAAGAGCTGCTGGAGGGCAGGGGAGAAGTGGGGGTGCCTCACATCTCCCTGCAGGTCAGTGGCCGGGAGCACCCCAGTGGGGCCGAAATCCTGCACGGGGAACAACTGCCCTGCCTCAACGAGGTTTTAGATGGGATGGGGCTGGGACCCAGCGGCCCTCCCATTCCCCCTCCTACCATCTTCTCAGTGGTGCCGTACCCCAAGACGAGGCGGCCCCCTAGCTCCCAGGAGAGTCTCGGCCACTTCACGCTCATTGCACCAAGAGCAGAGGACGCAGTGGAGGATGGGAAAGACACGGAGCCAGATCTGGACACCCTGACAACCATCAAGgagGATCTGGTGATGCCCACCAAAGCGCGAGGAAAGAAGGAGAAGCTAGAAACGGAGGGGTGGGAGAGCCAGAAGGACAAGAGCCGGGGCCCAGGGGGGAAGAAGGGCATCGGCAGCAGTGGTCCACTCCCGCCCGTCACCGAGTCCCAGCAGGATAAGAGAAAGTGGCTGACTCACTACCGCTGGGTTGCGCCTCCCAATGGAGAGGTGTCCCTCAAAGTTTGCTTCACTTCCTCCAAGCCAGGACAGTTTGAACAGACCTACAACTTTGAGCTGATGGGGACTAGGAGGTGCTATCAGCTGAACTGCAGGGGCGTGTGTGCCTTCCCCGCCATCAGCAAGGATCCCAAGGTTGTGTTGTCGCAGTGTAAGAAGGCCCTGAATGAGGATTATACTCTCAACAAGACCTACATCCGCAGGTCTGGGGTGTTCCAGTTCGGTCCTCTGTTCTATGGCAAAACCAGAGACAGGTACAAGGAGAAGAAGTACACAGAGAACATGGAGAAGCTGATCGTGTACAACATCTCCCCCCTGGATGCAGAGGTGGTCTTCTGCTTCCAGAAAGCCACATCATTTTTACTGGACCCTCCCACCATGACCCTCAGACCCGATGAGAAACAGGAGCTGACCGTGTGGGCCTACCCCACATCCCCGGGCCTGTTCGAGGACAGTGTGGTGTGCTGCGTCAAGGACAACCCCGATCCGGTGCTTTTCAGAGTCTCCTGCCACGGAGCCAGACCAGAGCTGGACCTGGACTGCACGCAGCTGAAGTTTAAAACCCCGCTGCACAGGAAGGTCACAAAGAGCCTGTCCCTGCGGAACCGCACCCTGCTGCCGGGGGCCTGGCGGCTGAGCGACCTGGAGATACTGGGGGGTGAGGTGACCGTGTCCCAAGACCAGGGCATCATCCAGCCCCAGGCCGAGATCTCCCTGCAGATGCACTTCAGGGCCAAGAGACCCCTAAACCTCAAGAGAATCATCCGCCTAGAGGTGTCAGATGTGGAGAAAACCCTGGGGGTCCTTCACAGCGAGAATATCCAGGTCTCTTTGGAGGCCTACGATGTTTCTCTGGATTTGAGCCTGTCCAAAGGTGCCGCCGACGGCCTTGATTTCGGGACAATCAAAGTATCGGATGAAGTCGTGCTGTCAGTGCATCTGAAGAACAAAGGCAGATATGAGATCGCATTCAAGTTCCTGCTGGAGGCCACACAGCCAGGCATGCCGAACCTGAGCCCCCTGTTCACCATCACGCCCAGCGAGGGCTCCCTGAATCCCAACGACCGGGCCACCGTCGTGCACATCGCTTTCCGCTCCAGCAGAGAGGTGTGCATCCAGGACCAGCCCATCCTCAACTGCCAGGTGATTGATCCCAACATCACAGAAGGGGGAGAGACCATAGCCAGCATCCCTGTGAAGATATCCGTCCAGTCTCTCTTCACCAAGTACTGCATAGTGCCGGCCAACGACTTGAACTTTGGCGCAATCGTGTGCGGTACTGGCACGCGCCGTACTTTCAccattgagaacaagggcaagCTGGGGTTCAGATACAACATCTTCAGCATGCCCAGAGATGAGCCACAGCAGACCCAGAGCAAAGGGTCGGTCGCTGCTAAGCAGACGCGTGTCTCCTGCTCTGGGAAGCCAGTGTCCGTCCACAAGCTCGGGCCCAGTGAGTCCATGCAGAGGGAAAAGGACATTTCTGCGCAGGCCACGGTCACTGTGGGAGTGTTCACCGTGTCCCCGGGTTTTGGACGCCTGGCCCATGACGCCCAGCAGGTCATCACTGTGGAGTGCCTGGCCAACCAGGAGGGCAAGTATGAGGAGTTCCTGGGCATCGACATCTCTGACCGGGACCCCCGTGACCAGCCCAATGGCATCTCGTACAGACTGGAGGCTGAAGGCTGCTTGACAGGAACCACCTGTAACTACAGTAGCCTCATCCAAAGTCAGTCAGCGGACCACACGGGGGTCCACATCGAAGACAAGTTCCTGTTCAACAACGTCCCGGTGTGCCAGCAAGCCAGGGCGAGCGTCAAAATCCTCAGCAACAGCAAAGTGCCCCGCCACCTGAGCCTGTCCGTGAAGCCCGTCTGCCAAGATCCCTTGCCATGCCAGCGATGCGTTTGAAGGATCTCCAGTTTTAGAGATTATGTAGGGCTTGctgacacaaatgtatttaaaatgctggaATTCCAAAGTAATTAAGTGTCATTGCACGAGAAAACCAGGGGAAGGTCGGAAGATAGGGGTTATCCAAATCCCCCCGATATTTAGTATGTAGGATAGTTATTAGGAACTATGATTAACCATATAATATAAGGTTTCAGGTGTTTTCAGTTTCTGACATCTGGGAGCCCCCTAGTGGGCGTCCAAATCATGCATTTTCTGGTCTTAAAATGAACTGATTTCACACTAGTGAAAAGGTACCTATAAAAGGTATGACTTCAGCTCCTGCGTTAATGTTAGTACCACAGCAGAGCGACACCCATGAACATATCCAGCCCTGGTCGTTAAGTTATGGTCGTAGTATCGGCATTCACAGTTGGCATACAAATCTCCAAACAGTTCTGAAGAATGGCTCATATTGAAGGGAGCAGGACGTTCACGCACAACAACCCCAAGAGAGAAGCTTGGCAATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74871 lncRNA upstream 16575 4039515 ~ 4039920 (+) True G59857
TU74862 lncRNA upstream 105085 3951130 ~ 3951410 (+) True G59849
TU74858 lncRNA upstream 210065 3845999 ~ 3846430 (+) True G59845
TU74854 lncRNA upstream 327798 3728372 ~ 3728697 (+) True G59841
TU74853 lncRNA upstream 333049 3722891 ~ 3723446 (+) True G59840
TU74978 lncRNA downstream 635517 4707564 ~ 4734675 (+) True G59936
TU74979 lncRNA downstream 635517 4707564 ~ 4734675 (+) False G59936
TU75000 lncRNA downstream 678418 4750465 ~ 4752896 (+) True G59955
TU75001 lncRNA downstream 686238 4758285 ~ 4758647 (+) True G59956
TU75004 lncRNA downstream 724527 4796574 ~ 4800283 (+) True G59959
AMCG00019948 mRNA upstream 457940 3583073 ~ 3598555 (+) True AMCG00019948
AMCG00019934 mRNA upstream 805088 3241308 ~ 3251407 (+) True AMCG00019934
AMCG00019936 mRNA upstream 822080 3211257 ~ 3234415 (+) True AMCG00019936
AMCG00019937 mRNA upstream 849139 3201986 ~ 3207356 (+) True AMCG00019937
AMCG00019935 mRNA upstream 860280 3193787 ~ 3196215 (+) True AMCG00019935
AMCG00019959 mRNA downstream 452309 4524356 ~ 4555905 (+) True AMCG00019959
AMCG00019961 mRNA downstream 487259 4559306 ~ 4587941 (+) True AMCG00019961
AMCG00019958 mRNA downstream 531248 4603295 ~ 4621533 (+) True AMCG00019958
AMCG00019957 mRNA downstream 558994 4631041 ~ 4650566 (+) True AMCG00019957
AMCG00019963 mRNA downstream 586307 4658354 ~ 4677885 (+) True AMCG00019963
TU74774 other upstream 806433 3241439 ~ 3250062 (+) False AMCG00019934
TU74243 other upstream 2978432 1075504 ~ 1078063 (+) False AMCG00019884
TU74166 other upstream 3610965 441598 ~ 445530 (+) True G59305
TU75012 other downstream 751766 4823813 ~ 4835797 (+) False AMCG00019967
TU75242 other downstream 1283725 5355772 ~ 5361863 (+) True G60137
TU75235 other downstream 1286417 5358464 ~ 5359365 (+) True G60132
TU75390 other downstream 2110665 6182712 ~ 6186084 (+) False AMCG00020000
TU76237 other downstream 5712070 9784117 ~ 9788052 (+) True AMCG00020105

Expression Profile