RNA id: AMCG00019967


Basic Information

Item Value
RNA id AMCG00019967
length 7764
RNA type mRNA
GC content 0.55
exon number 32
gene id AMCG00019967
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 4823813 ~ 4856929 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCCGATCGTTTGGGGCAAATTACCAAGGCAAAGGATGGGAAAAGCAAGTACTCCTCTCTCAGCCTTTTTGATAAGTACAAGGGAAAGTCAATAGAAACTCAGAAAACTACAGTTGTTCCTCGTCATGGCTTGCAGAGTCTTGGTAAAGTGGCCATTGCCCGGCGTATGCCTCCCCCTGCTCACTTGCCGAGCttgaaatctgaaaacaaaggaaacgATCCAAACGTGATTATTGTGCCCAAAGACGGAACAGGATGGGCAAACAAGCAGGAGCAACCAGACCAAAAGAGTTCTACTGCATCAATAATACAGCAGCAGGAGTCGCAGCCGCAGCCGGCTTTGCAGAAATCTGTCTCCAATCTTCAGAAACAGACACCAGCAGCCAGCCAGGAGGTGGGTTTAAAGGCCTCAAACCGACTGCAGCCCTTCTCTCACGAGGAATTTCCGACGCTGAAGGCAGCTGGAGAACAGGACAAGGCTGGCAAGGAAAGAAGCGTCTTCGATCTGTCGTATGGGCCCGGACCAAGCCTCCGCCCGCAGAATGTGACGAGCTGGAGGGAGGGTGGCGGGAGGAATCTGCACCCTGTGACCTCGGCGGCTGCTCTCTCTTCTGAGCCCGAAGGGAAGAGCAGCGGCCCAGCCCCCGAAACCAAGGAGCCTTCCCTCCGCCCCGCGCAGCCCATCCGCCGGGGGACGACGCCAGCCCCTCCCTACCTGGCACAGCAGCACCACCCGACCACGACCTACCATGACATGCTGCCTGCTTTCatgtGTCCCAAAGAGTCTCGCGATTCAACAGTTTCCTCTGAGCACGGCCCCCCTTCCGTTGCTGCTCCGGTCCGCTTCGAGGCTCGGCCCACCTTCAAACCACAGTTCCAGCCGTCCGAGCCTGTCAACGGTGAGCTCAGGAGAGAGAACCGATTTGCCCGTGGGCCTGGACGCTCATCAAGGCCAATCAGGCGCCCTGGGGATCGGGCCCCAAGACCCGCAATCATCAACCCCGAGGATTTGAAGGACCTGGATGAGCTGGACAATGACTGTGACGATGGCTGGGCAGGTCTCCACGAGGAAGTAGATTACAGTGAGAAGTTGAAGTTCAGCGATGATGAAGACGAACATGCATCtggagaaaagaagaacaaatgGGTTGAATGGGAGTACAGGCGAGATCGTCAGTCATCTCTCAGCTCAGGGGAGGGTGTGTACAGCAGAGACCTACCGGAGGAAGAAGCTGGGTGGATTGATCCGTTGGCAGCCAGGGGGCCCCACAGGTTCCAGGAGCCCCAACCACCGAGGAAGGCCAACGGCTGGGTCGGCCCTGCTGAGACTCAGGTCCAACAGAAGGCCCCTCCCAGTGTGCGGCGGCGGGAGTCTGtcgaggagaaggaggagagacCGGTCCCTCGTGGCAAATTCGTGTCCCCGGAGATCTCTGAGGCAGTGGAGCGAGCACGGCGCCGGCgtgaggaggaagagaggcGTGCTCGCGAGGAGCGGCTGGCAGCCTGTGCTGAGAAACTCAAGAAGCTGGACGAGAAGTTTGGCAAGACTGACAAAACGAAAACCGAGGGCTCTCTGAAGGACCTGGACTTCAAAGGTGTGCAGGAGCCTCCGTCGCCCAGCAAGGACTCCAAACTCAGCCAAGAGAACTGGCAGTACGGAACTAAAGAAACAATAGAAGTCCCTTCGGACCATTATTCCAGCCAGGATTACCCCGAAGATGAGGTGCCGGGATCAAATTATCGCAGTGAAGATGATGGCCCAGAACCCACTTCTCCCCTTCCCGATTATGGAAAGTATCAGAAGACACTCCCTCCTCGCTTccaaaagcagcagcaacaccAGCAGGAGCAGGTGTATAAAATGCAGCACTGGCAGCAGGGACACCCTCCCCAGTCTGGGACAGCACACCCTCAGCGAAGTTACTACCCCCCGCATGTGCTGGGGTTCGACCCTCGCTGGATGATGATGCCTCCTTACATGGATCCCCGTATGGCACAGGGTCGCTCCCCCGTAGACTACTACCCACCCCCTGTCCACTCGACAGGAATGATGAAGCCCATGATGCAGCAGGAACACCTTCACAGCCCAGGCTCGGCCTCAGACGAGAGCTGCCACCCTGCCATGCTGCAGGAGAGGAGAGCTCCCTCTACCGAGCCCTACCCGCCCTGGGGTCAGGATAGCTACCCCCCTGCCCCAGCCCGCAGCTTCACACCCCCTTACCAGAGACAGCACGAGAACAGGGAGATGAGCCGAGCTGACGAGAGGAGTGAGAGAACTTGCTCCCAGCAAGACACTTATGAGGAACGAGTGGAGGAATATGGTGAAATTCCCTCTGAAGATCTCTCTCATCCAGGATATCGCCAGAGCAGGAAGCCGGACGGGGTTTTCAGTTCGTCCCACAAGAAGGCAGGACATGATCAAGAAGGCAGACAGCACGAAGCAGTCGCCCCCTCCAACCAAAACCGTTCCCATTCAGGAGACTCTGAGTACCTGAAGACCGAGCGACAGAGTGAGTCCAAGGAGCTTGGGTATAGGCATCACAAAGATGGTTTGGAATCTAGAGATGAAGGGTTTGATACCGCGGGGAAGGAGAAGAGTTTTGGGGCCGATTTCTGGAGGAATGACGGCCTTCAGAAGAAAGACAGTGGGCCTTCCTCGCAATGGTCTGACTCAGGCTCCAATACCAGCAGCAGTCAGCCTCAAGAGTCAACGGGGAGAACCCTGACGCGGAGAACCGGCCCCATTAAGAAACCTGTGCTAAAGGCCCTAAAGGTGGAGGATAAGGAAAACGAAAAGCCTAAAGCTGAGATTGAAGAGAAACCCGCCCCCTATAAATTCAAAGACAAAGAAGTCCCTTCTAATTGCTATGATCTGAAAAAGGACTTGTGTCTACCTCTGAGTACCAAATATTCAGTTTCCACTGCACTGGTAACCCCTGAAGACAAGTACCCTCCACCTTCCATGGCAGAGAAGTCTCCTGAAAGCTCTGCTGATGATGAGCAGAAAGAGAACTGTTGGGAGAGCAAGTCCCAGCCAAGAGAAGCCAGAGATGCCGGTGATCCTCCTGCTCCACGCCGAAACAACTGGATCTTCATCGATGAGGAGCAGGCATTCGGAGGGGTGCGGGGAGCAGGGCGTGGCCGGGGCAGAGGGTTCAGAGAGTTTAGCGCTCGAGGAGGCAGAGGCGGCCGAGGTGAAAACTCGAGGGGAGGCTACAACGGGCAGAGGGTCAGTAGAGGCCGCAACCTACGCGAGTTCACCAAGCCGGATGATATCCAGAGGGGAAAGCCACGTCGGCGTAATGTCAGCGAGACCCTGAGCGAGACCTCGGAGTATGAGGAGCTGCCCAAACGGCGCAGACAGAAGGGCTCAGAAAACAGCGGTGATGTGGTCTATTCTGATTCTGGAAACGTCCGGAAGGTCGACAGCAAGGATTCCTGGAGATCTAACAAGGTCTACACCGATGAGCAGGGCAGCGGCAGTGAGTCCAGGGAGAAGCCCAAGTCCTCGAGAGGTTTCGGTCGTGCTCTGCCTCCTCGGCTTACCAACACCGGGTATGGACGAGGATTTGCATCCAGGGAAACAGCAACTTGGAGAGGCAGGGGTGGGCAGTTTGCAGGTGGTCCTGTCCAAGAAAATGGGTATGGCCCTGGAACGGAGACTTTCTCCAGAAGACCACAAGAAAGAGAACCCCTGAAGTATGCCCAGAAATACACCGGGACTTTCGCGGAGAATGGCTTTGAAGATCGTGGAGAAGATTACTATATAGATGGGGACAATCCCGACAACAGACCCCTTAGACGCCGACGCCCGCCACGCCAGGACAAGCCACCACGGTTCAGACGTCTGAGGCAGGAAACGCAGGTGGGCACGCAGTGGAACAGCGAGGAGCAAATCAACGGGGACTTCTCAAACTCCTGGCTGAGCAGGCCGAAGGGTGAGGAGAATGGGGCCCCCCTTCACTCTGGAACTAGGACCCGTGAGCTTTCATACCAGGACCAGGCCAACGATGACTGGGAGACAGCCTCAGAGAGCAGCGACTTCAATGACAGGAGGGAGAAGCGTCTGGGACTCATTCGGAGCGAGATGCCCTCTGAGTCTGGCCATGGTGAGGCAGGTGCTGGGGAGAAGAGAGAGCTCTCTAAACGCAGTTTCTCCAGCCAGAGGCCCTTGGTGGAAAGACAGCACCGAAAGGGGGACCCAACAGGCCTGGGTGACAGAATTTCCCAGTCAACAGAGACCCAGTCCAGGAATGAGAGCTGGCAGAGTGGAGTGTCTCCCAACAGTAAAAGGGTTTCGGAAGAAGCTGCCTCCGGATTGAACTCTGGTTCTGTGTACAGTGTGGATAAATCTGTCAGGACTGAAGATGTCTCGCAGAATAGTGCCTCGGAGCCTTCCAACAAGAAGCCCGAAAAGGAGCTGAAGCCAGGGATCTCAAAAAGTGAAAAGGCCGAACCCTTGTCTCAGTACGACCTAAATAGTTATCCAAtggaaaatgaacaagGAGTTGCAGTGCCCAGTGGTGAGGGCTTCACAGAGATCTTGTCCAAGAAACAACGCCGCCAGCAGGAAGAGGAACGCAGGAAGAAAGAGCAGGGGGCACTGGTGCCAGTGAAAAACCGTGTGATTGCCTCCAAGATCCCTCCCCGCTTTGCAAAGAAGCAGGGCAGCATTTCAATGGACCAGCCAGAAGAGGGCCTCTCCACCAGCAACCTGGGCACGGAGATCTGGGAGAACAGCAGCACAGCTCTGTCTGTTCAGTCCACTGCCGGAGATTCCTGGACCAAGCCAGTGTCCTTTACAGGGACTGAAACAAACTCAAACGAGGTGTTTAAAGGGAGTCAGACTGACAGTGGGATTGACCTGAGTGCTGAGTCTCAGGGGTCCTCTGCCAACTCCTCCCAAAGAAGTTCCCCTTATGGCACCCTCAAGCCTGAGGAAATCAACGGGTCAACCCCAGCAGAACCAAAACCAGACGGGCTCAAAGACCTCCCTCCCAAGCACATGGAGAAGAAGGATTCAGATGCCACTCCAGAACAGAGCAAAGAGCACAAGCCCGGCCCCATCGGGAACGAGCGATCCCTCAAACACAGGAAGGGCTCCGAGGGCATCGAGAGGCTGGAGGGAAACATGCAGCCCGTGAACGGAGTGGATATTCACGTGGAGAATGTGATCCCAGTCCCACCCATCGAGTTTGGGGTCAGTGCAAAGgACTCTGACTTCAGCCTCCCTCCTGGATCCACCCCTGTTCCCGTCTCAAACCCAGTGACTAAGTTGCAGGATGCTTTGGCTAGTAAtGCTGCTCTCACTCAGGCAATCCCCATGCTGCGCAGAGACCTGCAGCAGGGCATCAACCTCAACCCTATCTCCTTCCCCAGTGCCGACCTCACCCTCAAGATGGAGTCGGCGCGCAAGGCCTGGGAGAACTCACAGTCTCTACCCGAGCAGGGCTCCCCGGGGGCGGCAGGCTCCGGCACCCAGCCCCCCTGCAGCGTGGGCTCCTCCAGCGGGGTCAGCTACAGCTCCTTCGGGGGGGTGTCCATGCCTCCCATGCCGGTGGCTTCTGTGGCACCTTCAGTCTCGATGCAAGGCAGCCATATTCCACCTCTCTACCTGGATGGGCACGTCTTTCCCAGCCAGCCCCGCCTCGTTCCTCCCACCATGCCTCAGCAGCAGAGCTACCAGCAGGCGGCCGCGGCCCAACAGATCCCCATCTCCCTGCACACGTCTCTCCAGGCCCAGGCGCAGCTGGGGCTCCGCGGGGGGCTGCCTGTCTCCCAGTCCCAGGAGATGTACAACTCCATCCCATCCTTCAGGTCCCAGGTGTACATGCATCCAAACCTCTCCCAGCCCAATGCCATGGTCCTTTCTGGAGGAGCTCCTATGAAAGGCCATTACTCAGCCTTCCCGGGCATGCAGCCCTCCGATATGGTGAAGACGCAGTCTGGCTCTCATTACCAGCCCATGAATGGAAACCAGACCCTGGTGTACGATGGGCAGATGAACCAGGCGGCAGGGATGGGAACCTCGCAGCTCATGGACTCCCAGCTCATTCAGGTGACCATGCCTATGCCGGGCTCCCAGCTGCGCTACGGTTCTGCCCAGCAACACCTGATTCTGCCCCAGTCCATCCAGCTCCAGCAGGGCCAGAACCTCCCCGTCGGAGCCCCCCGCAGGATCATCCCCCCCGGCTCCCAGCCCCCTGTCATGACCGCAAGTAGGGAGACATCTCAGATGGAAATGAAAGGCTTTCAGTTTCCAGATAAGTCAAACCATTCTCCTGGCATGTCAGCTGCGTCTGCCCCAAACCCCAACTCCTATAGGCCTGGGTCTGCCAGTCCCAGTGGGAAACCATCAGGTCCTGGGGGACCAGCCAACGTAGCTCCTCTCCCAGCACACTACGCCCAGCAGGTTCCCCCGCCTCAAGGCAGCATGATGATGCACATGCGCCCCCCCACCACCGGCCCCTTCCCCAACCCCATCCAGCGGCCCGTGATGCAGATGAACAAGACCGTGATAATCCGCTCCCCCCAGTACCCCAGCCCTGGCCGAGACCCTCCCCCTTCCGTCTCCCCCGCCCACAGCACTGACTCGGTGAAGGGGACGGAGGAGGGCATGAAGACTAAACCGCGTGACGTCCTGCAGAGCTCCAGCGACGGAAAGGGACAGGCAGGAATGGCAAAACTGCAGGAGCCTCAAGCCTCGGGTCAAATGAAACCGGTCCGAACCGGAGCCATCAAGCCGCAGTCCGTCAAGGCAGATGAGGGAAAGGCCTAAGTGGGACCAGAGCTCTTTAGCTGGCGAACACGAGCCACAACGAACGCAGTCGCAAAGATTCAGTGCAGCACCACCGTTTGCCCGGGGATAATCGGTGGGATTTGACCCATATTAAAGCAAATTCAGACATTGTATTAATGaacacagtataaatatatatatataaatctctatatatatagacacatagGGACACTTCCAAGCagacttttcagtttttatttattaacatataagTACGTACAGTAAAGCATTCAGGTTTTTTATGTCACTTTTCTCCATCACAAGGAAACAGAGGTTGGGGGGAGAAATCAGCTCCTGCAGCTCAGAATAATGTGAGGAAAAGGATTGCAGTTGTGTAAATGTGGCAAATGCAAGAATTTCCAGTGATAAAAAGCTAACCTGTAAGCTTTTTAAGCATTCTCtcccagcatttttttttttttttttttttcttagccACGTTGCTGGTACCttgttttaactatttttttcttctcttttaagTAATCTGACAGCTAGTTAAGCCCTCATTATTAATAGGcttgttttattcaataaaattCCATTCAAACCCCAAAAAGAAGATTTCAATTCTGTGCAAGTATGAACAAAAGCTAAAGGTTGCTCACAGAGACCCTATAAAACCTGTTACAAGTGTATTTTCTCACGGCTTGTGAAATGTAACCATTAgtaactgcaaatgtttctgtaaCTCAAagactagatttttttttttttttctttttcttgtttggtttttttctttttccattgtGGTATCGAAGTTTGACATCATaaatcactttttcttttaaaaagcttCACAGAGGTTTATGAAGTGTTTTATGCATGTGGTGTAAAATGTATACGCCAGGGCCAGTGATACTTGACATTTCTGAGATGTATCTGAAGCGAGTATAATGTACAGCTGAGATTGTGTGGACAGTGCAAAAAGAGTGTAtgcgtgtgtgggtgggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75004 lncRNA upstream 32586 4796574 ~ 4800283 (+) True G59959
TU75001 lncRNA upstream 74222 4758285 ~ 4758647 (+) True G59956
TU75000 lncRNA upstream 79973 4750465 ~ 4752896 (+) True G59955
TU74978 lncRNA upstream 98194 4707564 ~ 4734675 (+) True G59936
TU74979 lncRNA upstream 98194 4707564 ~ 4734675 (+) False G59936
TU75107 lncRNA downstream 135709 4992638 ~ 5028847 (+) True G60038
TU75147 lncRNA downstream 317507 5174436 ~ 5175779 (+) True G60072
TU75309 lncRNA downstream 839698 5696627 ~ 5696853 (+) True G60201
TU75310 lncRNA downstream 843572 5700501 ~ 5700840 (+) True G60202
TU75326 lncRNA downstream 935540 5792469 ~ 5792880 (+) True G60215
AMCG00019965 mRNA upstream 37062 4795433 ~ 4795807 (+) True AMCG00019965
AMCG00019962 mRNA upstream 64206 4768115 ~ 4768663 (+) True AMCG00019962
AMCG00019963 mRNA upstream 154984 4658354 ~ 4677885 (+) True AMCG00019963
AMCG00019957 mRNA upstream 182303 4631041 ~ 4650566 (+) True AMCG00019957
AMCG00019958 mRNA upstream 211336 4603295 ~ 4621533 (+) True AMCG00019958
AMCG00019966 mRNA downstream 4166 4861095 ~ 4887003 (+) True AMCG00019966
AMCG00019969 mRNA downstream 32849 4889778 ~ 4896490 (+) True AMCG00019969
AMCG00019973 mRNA downstream 132611 4989540 ~ 4992117 (+) True AMCG00019973
AMCG00019978 mRNA downstream 234505 5091434 ~ 5103902 (+) True AMCG00019978
AMCG00019981 mRNA downstream 248460 5105389 ~ 5115802 (+) True AMCG00019981
TU74774 other upstream 1582807 3241439 ~ 3250062 (+) False AMCG00019934
TU74243 other upstream 3754806 1075504 ~ 1078063 (+) False AMCG00019884
TU74166 other upstream 4387339 441598 ~ 445530 (+) True G59305
TU75242 other downstream 498843 5355772 ~ 5361863 (+) True G60137
TU75235 other downstream 501535 5358464 ~ 5359365 (+) True G60132
TU75390 other downstream 1325783 6182712 ~ 6186084 (+) False AMCG00020000
TU76237 other downstream 4927188 9784117 ~ 9788052 (+) True AMCG00020105
TU76875 other downstream 7662835 12519764 ~ 12537752 (+) True AMCG00020177

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000059_08294949_08306238.mRNA True 1840 mRNA 0.57 10 CI01000059 8294949 ~ 8306238 (+)