RNA id: AMCG00019973


Basic Information

Item Value
RNA id AMCG00019973
length 1253
RNA type mRNA
GC content 0.56
exon number 4
gene id AMCG00019973
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 4989540 ~ 4992117 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGGGCCGGCTGCTCTGCCTGCTCTTACTCCTCTGTCCTCACATCGGCTCCTGCGCCTCCGCAGACAAGAGGACGGGCTGCCTTCGAGTGAACCCCTGCAAGTGCATCCTGAAGGACGGCTCCGGCGTCATTAACCTGGCGGCGCTGGGCGACTCGGCCGGCTTCCTGCAGCGGGGCGCGCCGGTGGCGGCGGTGGCGGCGGCGGGGCCCGGGGCGCCTGCGGGGGCCGCGGTGCTGCTGTCCTTCAGCCCGTGTGTGCCCTTCTCCGAGCCCGCGGAGCTCTCCGCCGCACAGTGCCTGGGAGTGGCGGCCTGTGTGGAGGTCAGACAGCACACAGGCAGCGGGCTGGTGAGTTATTACCTGAACTACGGCAGACACGAAGGGAATGAATTCAACTACAACAACCACAGCCAGACCCTCTCCGTCACATACCCAGCCCGGCCCCCCCAGCCCCAGTACACCGTGGCGCACTACCACTGCAGCCCCAACCGCTCGGTGTCCGTCTCCCAGCCCCTGGAGCTGGACGGGGCCCTGGAGATCTCTGTGCACAGCCCCTGCGCCTGTCCCAACACCTGCTCCCTGGAGGACGTGGGCCCTGGCACCATCTTCCTCATCATCTTCTGCCTCGCGGGCACGGCTTACTTCATACTGGGCTCCTGCGCTCTGCGGCCCATCAGGACTGCCAGCGGGGTACAAATCGTGCCAGAGGAGAGCCTTTGGTGCCAGTTGTGCTCGCTGTTCACCGTGAAGAAAGGAAGACGGCACAGGAGGCGGCGGTCCAAGCATGAGGAGCCCCTCTGAGGAGACGTGCACAGGCGCCGTCCTGCCCCGTGGAGGGCTGGGAAGACATGCCCATACGCTGAAGTCAACATTGACTACATTCCTTAACAGGAATAAAAGTGAAGACTTAACCTACTTATCTCACACTGCGGGGTATCGGAggcaatttcagtttttaaaagtaatCTCATTCTGATGGATTGAAAGCATTTCCAACTCATCTGTCTTGTGAATCAGAGACATTAGAGAGTTATGCAACATCTGAAGTTAGAAAACCATAAATACCGACTTCACTGACAAACTCTGttgttactttttgttttattttctgtagggGTTAGAGGGGTCTATATTTTGGGCgtttattttagtatatatagttgatttgtaattttatcctgttgtgtattatgttgtCATGCCAATAATATCTTTCAATATCTGtgccaaaaataaacatttctagACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75004 lncRNA upstream 189257 4796574 ~ 4800283 (+) True G59959
TU75001 lncRNA upstream 230893 4758285 ~ 4758647 (+) True G59956
TU75000 lncRNA upstream 236644 4750465 ~ 4752896 (+) True G59955
TU74978 lncRNA upstream 254865 4707564 ~ 4734675 (+) True G59936
TU75107 lncRNA downstream 521 4992638 ~ 5028847 (+) True G60038
TU75147 lncRNA downstream 182319 5174436 ~ 5175779 (+) True G60072
TU75309 lncRNA downstream 704510 5696627 ~ 5696853 (+) True G60201
TU75310 lncRNA downstream 708384 5700501 ~ 5700840 (+) True G60202
TU75326 lncRNA downstream 800352 5792469 ~ 5792880 (+) True G60215
AMCG00019969 mRNA upstream 93050 4889778 ~ 4896490 (+) True AMCG00019969
AMCG00019966 mRNA upstream 102537 4861095 ~ 4887003 (+) True AMCG00019966
AMCG00019967 mRNA upstream 132611 4832869 ~ 4856929 (+) True AMCG00019967
AMCG00019965 mRNA upstream 193733 4795433 ~ 4795807 (+) True AMCG00019965
AMCG00019962 mRNA upstream 220877 4768115 ~ 4768663 (+) True AMCG00019962
AMCG00019978 mRNA downstream 99317 5091434 ~ 5103902 (+) True AMCG00019978
AMCG00019981 mRNA downstream 113272 5105389 ~ 5115802 (+) True AMCG00019981
AMCG00019980 mRNA downstream 126043 5118160 ~ 5132090 (+) True AMCG00019980
AMCG00019977 mRNA downstream 161027 5153144 ~ 5157266 (+) True AMCG00019977
AMCG00019979 mRNA downstream 169842 5161959 ~ 5166851 (+) True AMCG00019979
TU75012 other upstream 153743 4823813 ~ 4835797 (+) False AMCG00019967
TU74774 other upstream 1739478 3241439 ~ 3250062 (+) False AMCG00019934
TU74243 other upstream 3911477 1075504 ~ 1078063 (+) False AMCG00019884
TU74166 other upstream 4544010 441598 ~ 445530 (+) True G59305
TU75242 other downstream 363655 5355772 ~ 5361863 (+) True G60137
TU75235 other downstream 366347 5358464 ~ 5359365 (+) True G60132
TU75390 other downstream 1190595 6182712 ~ 6186084 (+) False AMCG00020000
TU76237 other downstream 4792000 9784117 ~ 9788052 (+) True AMCG00020105
TU76875 other downstream 7527647 12519764 ~ 12537752 (+) True AMCG00020177

Expression Profile