RNA id: AMCG00019978


Basic Information

Item Value
RNA id AMCG00019978
length 4173
RNA type mRNA
GC content 0.42
exon number 10
gene id AMCG00019978
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 5091434 ~ 5103902 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGTGCCTGTGTCTTTACGTGCCCGTGCCGAACTCGGATCACACGGAATTCGAGTATTTTGAGTCCAATGGGCTTCCGTCCGAGCTGAAGTCTCTCTTCAAACTGAGTCTGTTCCTCCCGTCGCAGGAGTTCAGCACTTACCGAAAGTGGAGGAAGaaaaTTGTGAAAGCTGGAGACAAGGACTTGGATGGCCAACTAGATTTTGAAGAGTTTGTGCACTATCTCCGAGACCATGAGAAGAAATTGCGGCTCGTCTTCAAGAGTCTGGACAAGAAAAATGACGGACGTATTGATTCACAGGAGATTATGCAGTCCTTACGTGACCTTGGAGTACACATTTCAGAGCAGCAGGCTGAAAAAATCCTAAAAAGCATGGATAAGAATGGTACAATGACCATTGATTGGAACGAGTGGAGGGACTATCATCTATTGCACCCAGCTGATAACATTCCTGAGATCATCCTTTACTGGAAACACTCCACGATATTCGATGTTGGCGAGAGTCTTATGGTGCCCGATGAGTTCACGGCAGAGGAGAGGAAAACGGGCATGTGGTGGAGACACTTAGTGGCGGGAGGTGGCGCTGGTGCAGTGTCCAGGACGTGCACGGCCCCCCTGGACCGGCTCAAAGTGCTCATGCAGgTTCATGGATCCCGGACGAACAACATGTGCATCGTTAGCGGCTTCACGCAGATGATCCGCGAGGGCGGGATGCGGTCACTGTGGCGAGGGAACGGCATCAACGTCATTAAAATCGCCCCTGAATCCGCCATCAAATTCATGGCCTACGAGCAGATCAAACGCCTGATCGGAAGCAATCAGGAGACGCTGGGGATCTTGGAAAGGCTGGTGGCCGGTTCCCTTGCGGGGGCAATTGCACAAAGTAGCATCTACCCTATGGAGGTGCTGAAGACGAGAATGGCGCTGCGAAAGACTGGGCAGTTTTCGGGGATGGCAGACTGCGCCAAGCACATCTTCAGGAAAGAGGGTCTGGGGGCTTTCTACAAGGGCTATGTTCCCAACATGCTGGGCATCATCCCCTACGCTGGCATCGACCTGGCTGTGTATGAGACACTGAAGAACTCTTGGCTGCAGCGCTACGCCACGGACAGCGCTGACCCCGGCGTGTTTGTTCTCCTGGCCTGTGGGACAATCTCCAGTACATGTGGCCAGCTGGCCAGCTACCCCCTGGCACTGGTCAGGACCAGAATGCAGGCACAAGCCACTTTAGAAGGAGGTCCTCAGATGACCATGTCGGGACTGTTCAAACACATCCTGAGGACAGAAGGGGCATCGGGACTGTACAGGGGTCTGGCACCCAACTTCATGAAAGTGATTCCTGCTGTGAGCATCAGCTACGTGGTGTACGAGAACCTGAAATTGACCCTGGGTGTTCAGTCGCGGTGAGAGGACAGTAGAGTAGCGTCTGAAGGGAATCAAAACTGGTCACGGAGAGGAGGGGAAAAGGACTGCGAAAAATCTCCGGCCGAGAGACCAGAGGTTGCTCAAATCGTCTCATTCTGTGAATGTCTgaagcaaaataatgtaatatagattaaaaaaacactagaAATATGAAAAGCTACTGATTGTTAGAGATGTTCTGACACTGAGCATTTTAAGCATTTGGAAATGAAGACAAGGAATGCaacttttttcctgtttttgttttgtgaattaaTGTTAATTCAAGAGAGGCACTTCTAAACCAGGTGGCTGTTGGCTGCCAATGACTAGAACCCCAAAAATAAGTTGTCCAAAAACTAATCACATCAGATTTGAGTCTCTACTTGTAATCTTCATCAAAGAAATGAAGATCTTGCATCTTTGTTTTGGGACCAAGAGCCCGTCTCTGTGATCGGCCTCTTCACAAATGTAGTTGCTGCTGTAGAGAATCCACAAGCCTGTCTGACAACATGGTCCAAGAACAAATTTTGAAGTGTTCAGGGGCAGGCTTTCAAGCTTTCTCCCCTTCCCGGTAGTGCTAACTGCACCCTTACGTCAGGTTTGACAGTAGTGTGTGCCTCCCTATCTGCAtggttttaaagaaatgtacatcCAAAACATACTTGATTTACAAGggccttttgtttatttggagGATCAGTAATAAAACTAAGTTTTAATATCTTGCTTTTATGATCATTATCATCAACTTATTTTAGCTTAGCTATATCTTTCTGATCTGAACCAAGACTTTTTTTCCtacactgtacattttttaaagcattgtcATCAtgcaaatatgattttaaactgACTATTCTCCTAAAAGTAGCCAAACTTGCTAAAGGCTAAGCTAGGCTGCAAAAGCTGTTAAATTCtgtggatttcattttttttttaaacgcagTGCAGGTGGGGAATCCAATAGTGTCTTAACTGTGAATTGTCTTACAGAACAAATTAACTGGGGTGATGTTGacctgtataatttatttttatatgttgactgtataatttattttgcagtgctaaccagatatttattttaaagtggtctgttttaggaaaatgaaaataaaatgtgtatgttctATTGAGTTTGCAAATTCTAGAAGAAAACAACTTTCAGAATatccatttctttttctttagcCATTGGGAGCAAAGATTGACAATTGACCCTTTTTCATGAATGGGTACAATTGTGATTTCAGTCTTTGCAAAACTGCATTTCTAGTGATAGAGGAGGGTTGTGGAAGAACAACAATCACAGTGTCTGGAAGGGATGAGGAGAATTGTTACATGGGCAAGTCATGGCCAGTAGATCTGTTCTCAAACCTTATTTTCTAAGAGTGGGTCTATACAAAGAACTGAAAAGAAATGGTGTGCTTGGTGGAGGAATTTTGATCCTGCGTTGGCAAGCAGTCTGAACTCTTTTTACTTCCacatttgctttcaaaatgaaacGTGTCCTTGATTAACACTTGAGCACTTTAGAACGATTTGTTATAAAAACAGTGAATGTCTTGTGGACTCTGAGCGGCGGGAGGGACACAGCAGTGAGACTATCacttgattatatttatttgtagctTTAACATAATTAGTAAAAGGGTTCCCTTAaatgtagtggttttagtattAAAATGGAGCCtggtatatatatgtttcatgTTCTTAAGGGGGTGAAAATAGTTCCAtggaattaaatgtttattcagATTCCCTCAACTAAAACTGCCTGTTGTCCGATGTATGAGATGGGTTTGATTCCTATAATGAAATCACATTCCCTGTAATATGAGAATCAAAGACTTAAGTGTTAATCAAGACTTCTGCCGGACTTCATAAAATTAGCATGCTTCTGGTTGGGCTGGCTGCATTGTCTTGCATTTCGGGTCAGTTAGGATtgtgaagggagagagagagttaagtTGGTGAGGAGGGGGCTAATTTTAATTCTCAGGGAAATAAATGTCAGACAACTGGGATTTTCATGTTTACTAAAACAATTGCACTTCTCCACAACTGTCTTGAATAGGCACTTATTTTCCTGTAGcagttttaagtttgttttttcctccccttagtatcactgtttttagttttattttcctgtatgcAACGTATATATATGGTTTAAGAAAATATGCAAAAGATTTAGAAAGATGCATTGTATGAATGTGGCACGACTGCCTCGTTAAGTGTTATTAGAGGATACGTGTAGTATTCTAATATTTGCACAGTGGCTTCAGGACAATGCTTTTGGCACCCAGCCTGACGGTCTATTCCATTATGTACAGAATATGTAGGTCTAGTTGAATCCTCAAAACATATTCAGAATAGTCTGAATATTGCGCAttcccatttgttttcttccagcCTGACCCTTTATAAGGTATACTTGAAATGTATTCGGACATCTTCTATACTGCTAAATGCATAGCTGCAAACATACTCCAAGACAGACAAGAACTTACCAGAAATCGAAACATTTCTGTGCAGCGAAAATGCCACATCATATCTATACTGAAGGCTTCAGCCAGTTATATTGAAGAAGGAAATACATATATCTTACAGATGTGATGCAGAGaacaatgcaaaaatgtttcataaatACTAATTTTGTCCATTTTGTAGAGTATGAGCGAATTCATGaatgtaatgcaaatgtatttgttataatgGGAACAACTGCAAAATAAAGTTATTCTCTTAGCTGAA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K14684 SLC25A23S; solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75107 lncRNA upstream 62587 4992638 ~ 5028847 (+) True G60038
TU75004 lncRNA upstream 291151 4796574 ~ 4800283 (+) True G59959
TU75001 lncRNA upstream 332787 4758285 ~ 4758647 (+) True G59956
TU75000 lncRNA upstream 338538 4750465 ~ 4752896 (+) True G59955
TU74978 lncRNA upstream 356759 4707564 ~ 4734675 (+) True G59936
TU75147 lncRNA downstream 70534 5174436 ~ 5175779 (+) True G60072
TU75309 lncRNA downstream 592725 5696627 ~ 5696853 (+) True G60201
TU75310 lncRNA downstream 596599 5700501 ~ 5700840 (+) True G60202
TU75326 lncRNA downstream 688567 5792469 ~ 5792880 (+) True G60215
TU75340 lncRNA downstream 886328 5990230 ~ 5990491 (+) True G60228
AMCG00019973 mRNA upstream 99317 4989540 ~ 4992117 (+) True AMCG00019973
AMCG00019969 mRNA upstream 194944 4889778 ~ 4896490 (+) True AMCG00019969
AMCG00019966 mRNA upstream 204431 4861095 ~ 4887003 (+) True AMCG00019966
AMCG00019967 mRNA upstream 234505 4832869 ~ 4856929 (+) True AMCG00019967
AMCG00019965 mRNA upstream 295627 4795433 ~ 4795807 (+) True AMCG00019965
AMCG00019981 mRNA downstream 1487 5105389 ~ 5115802 (+) True AMCG00019981
AMCG00019980 mRNA downstream 14258 5118160 ~ 5132090 (+) True AMCG00019980
AMCG00019977 mRNA downstream 49242 5153144 ~ 5157266 (+) True AMCG00019977
AMCG00019979 mRNA downstream 58057 5161959 ~ 5166851 (+) True AMCG00019979
AMCG00019986 mRNA downstream 135086 5238988 ~ 5272193 (+) True AMCG00019986
TU75012 other upstream 255637 4823813 ~ 4835797 (+) False AMCG00019967
TU74774 other upstream 1841372 3241439 ~ 3250062 (+) False AMCG00019934
TU74243 other upstream 4013371 1075504 ~ 1078063 (+) False AMCG00019884
TU74166 other upstream 4645904 441598 ~ 445530 (+) True G59305
TU75242 other downstream 251870 5355772 ~ 5361863 (+) True G60137
TU75235 other downstream 254562 5358464 ~ 5359365 (+) True G60132
TU75390 other downstream 1078810 6182712 ~ 6186084 (+) False AMCG00020000
TU76237 other downstream 4680215 9784117 ~ 9788052 (+) True AMCG00020105
TU76875 other downstream 7415862 12519764 ~ 12537752 (+) True AMCG00020177

Expression Profile