RNA id: AMCG00019981


Basic Information

Item Value
RNA id AMCG00019981
length 1494
RNA type mRNA
GC content 0.53
exon number 11
gene id AMCG00019981
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 5105389 ~ 5115802 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGAAGCAGACGTCGGAGGCGTCGACGCTGGCGAGGCTGTACCGGGACCTGACCCAGTACAGCTCGGCCCACGGCATCCCCAACATCTTCCGGGCGCAGCACTGGTTCCGCCGGGCGCTGTGGGCGCTGTTCGTGGCCTTCGCCCTGTGCTGCGCCCTGTGGCAGTGCACCGAGATGGCCCTGAGCTTCTACAGCTACCCCTCCCTGGAGAAGATCACGCTGGTCTCCAGCACCCAGCTGAAATTCCCCGCCGTGACCATCTGCAACCTCAACAGCGTCCGTTACTCAAACCGGAGCTCCCGGAACAGCTCTGGACCCTGGGACTCAGCCGAGGACCCCTCCAATTACGCCCACTCCTTCAACAAATTTGCCTCCGAATTTAACGAGCTCTCGGATGAGGAGAAGCTAGAAATGGGCCACCAGTTGGAAGACATGCTTATATTCTGCAATTACCACGGGCAAGCTTGTAACACAAGCTTCTTTTCTGGATTCATCAATTACAAGTTTGGAAATTGTTACACGTTCAATTCTCAAAAGTCAACTGACATCAGAGGCAATCCTATCAACAGTGAAGTGCTGAATACCACTAAGGCCGGGTTTATGTATGGACTGCACTTGGAGCTGTTCATTCAGCAGATCGAGTACGTGAAAGACATCACTCACTCCGCGGGCATCCGTCTGCTCATCCACGACCACTCCGCCACGCCCTTCCCTGAGGACGAGGGGGTCAACATCCCCCCCGGCACTGAGACGGACATTGGCATGATGAAGGTGGAGATCCAGAGGCTGAAATCCCCCTACGGCAGTCACTGCACTGACGGGGAGGGAGTCAACAACTTCTACCATGACTTGTATGGGTCCAGATACACCAGAGAGTCATGTAAGCGTACGTGTGCCCAGCTGAGCATCATGGAGAACTGTGGGTGTAGTCACTGGGAGTTTGCGGTGCCCCCAGGATCACACTACCCCAAATGTAATCTGAGTGCTGCTGGAATCAGTGAATGTTTGGAGCTGTACGAATATAAGTTTGCCCATGACATGCTACCATGTAACTGCCCTCTGCAATGCAAGGAGGAGATCTACCAGCTAACGATCTCTGGATCACAGTGGCCTGCAACAGCGTTTTTAGAAAAATTCTCCAGTGATTTGAAAGCCATGGGTGGTCAGCTGAGCATCATTGCAGACAGCCCCCAGCTTATAAGAGATAATTTAGTGAGAGTTGTTGTTTACTACCAGCAGCTGAACTATGAGCGGATACAGGAAGAGCCCTCAATTACTGAGATTGATTTGATCTCTAACATGGGCGGCCTGGTGGGACTGTGGGTGGGCTTCTCTGTTTGCACCTTGGCTGAATTCTTCGAACTCTTCATTGACGTCATGATATTCCTGGTCCGCCGCTGCCTGAGCAGGACTTTGTCCAACAGCTACACCAACTCTTACTGCGAGAAAGGAAGCCCCATCTACATCGGCCAGAAAACCACCAAAATATAG

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K03440 ASICN; acid-sensing ion channel, other

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75107 lncRNA upstream 76542 4992638 ~ 5028847 (+) True G60038
TU75004 lncRNA upstream 305106 4796574 ~ 4800283 (+) True G59959
TU75001 lncRNA upstream 346742 4758285 ~ 4758647 (+) True G59956
TU75000 lncRNA upstream 352493 4750465 ~ 4752896 (+) True G59955
TU74979 lncRNA upstream 370714 4707564 ~ 4734675 (+) False G59936
TU75147 lncRNA downstream 58634 5174436 ~ 5175779 (+) True G60072
TU75309 lncRNA downstream 580825 5696627 ~ 5696853 (+) True G60201
TU75310 lncRNA downstream 584699 5700501 ~ 5700840 (+) True G60202
TU75326 lncRNA downstream 676667 5792469 ~ 5792880 (+) True G60215
TU75340 lncRNA downstream 874428 5990230 ~ 5990491 (+) True G60228
AMCG00019978 mRNA upstream 1487 5091434 ~ 5103902 (+) True AMCG00019978
AMCG00019973 mRNA upstream 113272 4989540 ~ 4992117 (+) True AMCG00019973
AMCG00019969 mRNA upstream 208899 4889778 ~ 4896490 (+) True AMCG00019969
AMCG00019966 mRNA upstream 218386 4861095 ~ 4887003 (+) True AMCG00019966
AMCG00019967 mRNA upstream 248460 4832869 ~ 4856929 (+) True AMCG00019967
AMCG00019980 mRNA downstream 2358 5118160 ~ 5132090 (+) True AMCG00019980
AMCG00019977 mRNA downstream 37342 5153144 ~ 5157266 (+) True AMCG00019977
AMCG00019979 mRNA downstream 46157 5161959 ~ 5166851 (+) True AMCG00019979
AMCG00019986 mRNA downstream 123186 5238988 ~ 5272193 (+) True AMCG00019986
AMCG00019988 mRNA downstream 205133 5320935 ~ 5333031 (+) True AMCG00019988
TU75012 other upstream 269592 4823813 ~ 4835797 (+) False AMCG00019967
TU74774 other upstream 1855327 3241439 ~ 3250062 (+) False AMCG00019934
TU74243 other upstream 4027326 1075504 ~ 1078063 (+) False AMCG00019884
TU74166 other upstream 4659859 441598 ~ 445530 (+) True G59305
TU75242 other downstream 239970 5355772 ~ 5361863 (+) True G60137
TU75235 other downstream 242662 5358464 ~ 5359365 (+) True G60132
TU75390 other downstream 1066910 6182712 ~ 6186084 (+) False AMCG00020000
TU76237 other downstream 4668315 9784117 ~ 9788052 (+) True AMCG00020105
TU76875 other downstream 7403962 12519764 ~ 12537752 (+) True AMCG00020177

Expression Profile