RNA id: AMCG00020004



Basic Information


Item Value
RNA id AMCG00020004
length 408
RNA type mRNA
GC content 0.53
exon number 1
gene id AMCG00020004
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 6126999 ~ 6127406 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCGCAGCACTTTGGGACATCTATCCTTTGAGGGTGTCAATGGCCTGGCATTCAGCACGAACAGCATTGACGACAGCACCCAGGCCAAGCTGGTCATCCCTCAGGACAGCGTGTACTTTGTGTACTCTCAGGTCACTATCCAGAAAACCAGCAGGCCCATCTCAGTGTCCATCAAGAGGGAGACCAAGGGCTACCCGGATCCCGAGACGCTGATGAAGTCCAAGACACTCGGTGGAGATTCCATCTACCAAGCAGGGGCCTTCGAGTTGCAAGCCGAAGACCATCTGTATGTGCAGCTGGAGTTTGAGAACCGGTCAGCAGTGCCGATGAAGCTGGTTTCTCATGAAGAAACTGAAACTTTCTTTGGGGTATTTCAGCTGCTACACACAGAGGGCACGGTCCAATAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU75372 lncRNA upstream 12840 6113164 ~ 6114159 (+) False AMCG00020001
TU75369 lncRNA upstream 27098 6099476 ~ 6099901 (+) True G60257
TU75340 lncRNA upstream 136508 5990230 ~ 5990491 (+) True G60228
TU75326 lncRNA upstream 334119 5792469 ~ 5792880 (+) True G60215
TU75310 lncRNA upstream 426159 5700501 ~ 5700840 (+) True G60202
TU75382 lncRNA downstream 27541 6154947 ~ 6155199 (+) True G60270
TU75385 lncRNA downstream 29387 6156793 ~ 6160571 (+) True G60273
TU75384 lncRNA downstream 37707 6165113 ~ 6172480 (+) True G60272
TU75388 lncRNA downstream 51139 6178545 ~ 6179635 (+) True G60276
TU75447 lncRNA downstream 232438 6359844 ~ 6382808 (+) True G60324
AMCG00020001 mRNA upstream 12803 6106994 ~ 6114196 (+) True AMCG00020001
AMCG00019999 mRNA upstream 94959 6023287 ~ 6032040 (+) True AMCG00019999
AMCG00019998 mRNA upstream 153527 5961221 ~ 5973472 (+) True AMCG00019998
AMCG00019991 mRNA upstream 780101 5342576 ~ 5346898 (+) True AMCG00019991
AMCG00019988 mRNA upstream 793968 5320935 ~ 5333031 (+) True AMCG00019988
AMCG00020000 mRNA downstream 55293 6182699 ~ 6187889 (+) True AMCG00020000
AMCG00020009 mRNA downstream 74602 6202008 ~ 6212464 (+) True AMCG00020009
AMCG00020008 mRNA downstream 97543 6224949 ~ 6267200 (+) True AMCG00020008
AMCG00020010 mRNA downstream 153117 6280523 ~ 6291842 (+) True AMCG00020010
AMCG00020007 mRNA downstream 211124 6338530 ~ 6341784 (+) True AMCG00020007
TU75242 other upstream 765136 5355772 ~ 5361863 (+) True G60137
TU75235 other upstream 767634 5358464 ~ 5359365 (+) True G60132
TU75012 other upstream 1291202 4823813 ~ 4835797 (+) False AMCG00019967
TU74774 other upstream 2876937 3241439 ~ 3250062 (+) False AMCG00019934
TU74243 other upstream 5048936 1075504 ~ 1078063 (+) False AMCG00019884
TU75390 other downstream 55306 6182712 ~ 6186084 (+) False AMCG00020000
TU76237 other downstream 3656711 9784117 ~ 9788052 (+) True AMCG00020105
TU76875 other downstream 6392358 12519764 ~ 12537752 (+) True AMCG00020177
TU76877 other downstream 6408132 12535538 ~ 12537752 (+) False AMCG00020177
TU76948 other downstream 6488386 12615792 ~ 12619817 (+) True G61491

Expression Profile