RNA id: AMCG00020010


Basic Information

Item Value
RNA id AMCG00020010
length 660
RNA type mRNA
GC content 0.57
exon number 5
gene id AMCG00020010
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 6280523 ~ 6291842 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCCGGCACAACccctgcacacagcacagaggtcTGCGGgagaaagagaagaagtACATGCTGCCAGTGGACAACCTAAAGCTGAGGGACGTGGAGAAAGGCTTCATGTCCAGCAAGCACATCTTCGCCCTCTTCAACACCGAGCAGAGACAGATAATAAATCAGGAGAAAAGCTTCTGTGCTGCCGTGCTGAAGAGACTGTTAGCGCCCTTGATGCTCACAGCACAAATGAACAGCAAGCAAAGCGAGTCTGAGGAGAATGGCTCGGACAGCTTCATGCACTCCATGGACCCTCAGCTGGAGCGGCAGGTGGAGACCATCCGCAATCTGGTGGACTCCTACATGGCCATCGTCAACAAGACCGTTAGGGACCTCATGCCCAAGACCATCATGCACCTGATGATCAATAATACCAAGGAGTTCATCCACGCAGAGTTGCTGGCCAACCTGTACTCGTGTGGAGACCAGAACACCCTGATGGAGGAGTCGGCGGAGCAGGCCCAGCACCGTGACGAGATGCTGCGCATGTACCACGCCCTGCGGGAGGCGCTCAAGATCATCGGCGACatcaacaccaccaccaccagcacgCCCATGCCCCCGCCTGTCGACGACTCGTGGCTACAGGTCACTGGCCAGCAGTCCGGCAGGAGGTAG

Function

GO: NA

KEGG:

id description
ko04723 Retrograde endocannabinoid signaling

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75388 lncRNA upstream 100888 6178545 ~ 6179635 (+) True G60276
TU75384 lncRNA upstream 108043 6165113 ~ 6172480 (+) True G60272
TU75385 lncRNA upstream 119952 6156793 ~ 6160571 (+) True G60273
TU75382 lncRNA upstream 125324 6154947 ~ 6155199 (+) True G60270
TU75372 lncRNA upstream 166364 6113164 ~ 6114159 (+) False AMCG00020001
TU75447 lncRNA downstream 68002 6359844 ~ 6382808 (+) True G60324
TU75499 lncRNA downstream 190992 6482834 ~ 6483995 (+) True G60354
TU75508 lncRNA downstream 278538 6570380 ~ 6572561 (+) True G60363
TU75591 lncRNA downstream 660611 6952453 ~ 6955093 (+) True G60431
TU75760 lncRNA downstream 1497031 7788873 ~ 7792223 (+) True G60566
AMCG00020008 mRNA upstream 13323 6224949 ~ 6267200 (+) True AMCG00020008
AMCG00020009 mRNA upstream 68059 6202008 ~ 6212464 (+) True AMCG00020009
AMCG00020000 mRNA upstream 92634 6182699 ~ 6187889 (+) True AMCG00020000
AMCG00020004 mRNA upstream 153117 6126999 ~ 6127406 (+) True AMCG00020004
AMCG00020001 mRNA upstream 166327 6106994 ~ 6114196 (+) True AMCG00020001
AMCG00020007 mRNA downstream 46688 6338530 ~ 6341784 (+) True AMCG00020007
AMCG00020006 mRNA downstream 56745 6348587 ~ 6358927 (+) True AMCG00020006
AMCG00020014 mRNA downstream 96564 6388406 ~ 6412281 (+) True AMCG00020014
AMCG00020015 mRNA downstream 123923 6415765 ~ 6443392 (+) True AMCG00020015
AMCG00020016 mRNA downstream 171750 6463592 ~ 6466574 (+) True AMCG00020016
TU75390 other upstream 94439 6182712 ~ 6186084 (+) False AMCG00020000
TU75242 other upstream 918660 5355772 ~ 5361863 (+) True G60137
TU75235 other upstream 921158 5358464 ~ 5359365 (+) True G60132
TU75012 other upstream 1444726 4823813 ~ 4835797 (+) False AMCG00019967
TU74774 other upstream 3030461 3241439 ~ 3250062 (+) False AMCG00019934
TU76237 other downstream 3492275 9784117 ~ 9788052 (+) True AMCG00020105
TU76875 other downstream 6227922 12519764 ~ 12537752 (+) True AMCG00020177
TU76877 other downstream 6243696 12535538 ~ 12537752 (+) False AMCG00020177
TU76948 other downstream 6323950 12615792 ~ 12619817 (+) True G61491
TU77200 other downstream 7057835 13349677 ~ 13350712 (+) True G61675

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01101024_00001263_00003768.mRNA True 635 mRNA 0.57 4 CI01101024 1263 ~ 3768 (+)
rainbow trout (Oncorhynchus mykiss) TU440596 True 473 TUCP 0.58 2 NC_048569.1 30210763 ~ 30211886 (-)